Gordonia pseudamarae: GII33_02495
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Entry
GII33_02495 CDS
T07482
Name
(GenBank) GAF domain-containing protein
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
gpd
Gordonia pseudamarae
Brite
KEGG Orthology (KO) [BR:
gpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gpd03000
]
GII33_02495
Transcription factors [BR:
gpd03000
]
Prokaryotic type
Helix-turn-helix
Other families
GII33_02495
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_8
GAF
HTH_50
TrwB_AAD_bind
nSTAND3
AAA_16
HTH_30
HTH_28
AAA_7
HTH_7
RsgA_GTPase
Sigma54_activat
Motif
Other DBs
NCBI-ProteinID:
QHN25007
LinkDB
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Position
581096..582943
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AA seq
615 aa
AA seq
DB search
MPNTDNRLLRVAAARADFLESGSQGAAGVGDIVVASWERSHAAGVDVAAAHSTFTDGIDT
GSLLVRCARPVLEQLTSDTVDMPLVIALTDSHARVVQRVDASVAVGRLLERVDFAPGFTY
AESTMGTNGVGTVFEAGQPVSVVGPEHFTEHLQQFACTGAPIIDPMTRRIEGVLDISTLS
HTWSPIMHALVKSAAKDIAQNLLLDRSQAQQAIFATYLRESVRTTKNAVFAFGGSVFMAN
DIAQAWFDTAQQKVLREHAAFLMTRKDRISDTVPLGDGRHVHITGTRIMTGADVAGMVVI
AEIVAGRRAGMSVDFADHHLPEIGVTTQATSSIIDDLSRPRETIVSGRSPAWLSACRELR
TALAEHTPTIVVGETGAGKFTLVTELFHALFDDARSISVDAEEFAAHYDSAEVEKLINPG
SAPTLYILRNIDQCTTDAAEQAERFLTTLDGVDGPVWYIATLSDSALDSDLPFRQMLGHF
GASVNIPPLRFRTDDIDQVTASLLRLLAPERKVRISPEARRVINRYSWPRNVSQLHEALV
HALRRRPVGEIQASDLPGYCQSFAQRTLTPVESAERDLIVSALRANDGNRSAAAEQLGMA
RSSLYRKLRTYGIAG
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgcccaataccgacaatcgactgctgcgcgtggccgccgcacgagccgatttcctggaa
tcaggctcgcagggggcggccggcgtgggcgatatcgttgtcgcgtcgtgggagcgcagt
catgccgccggggtcgatgtcgccgccgcgcacagcaccttcaccgacgggatcgacacc
gggtcgttgctggtcagatgtgcccgcccggtactggaacaactcaccagcgacaccgtg
gacatgccactggtgatcgcgctgaccgacagccacgcccgggtggttcagcgcgtcgac
gcctcggtggcggtcgggcgcctgctcgaacgcgtcgacttcgcgcccggattcacctac
gccgaatcgacgatgggcaccaacggggtgggtaccgtgttcgaggccgggcagccggtg
agtgtggtggggcccgaacatttcaccgagcatctgcagcagttcgcctgtaccggtgcg
ccgatcatcgacccgatgacccggcgcatcgaaggtgtactggacatctcgacgctcagc
cacacgtggagcccgatcatgcacgcgctggtcaagagtgcggccaaggacatcgcgcag
aacctgctgctcgatcgcagccaggcgcagcaggcgatcttcgcgacctacctgcgggaa
tccgtgcgcaccaccaagaacgccgtcttcgcgttcggcgggtcggtattcatggccaat
gacatcgcgcaggcatggttcgacacggcccagcagaaggtgctgcgtgaacacgccgcg
ttcctgatgacccgcaaggaccggatcagcgacaccgtcccgctgggcgacggcaggcac
gtgcacatcaccggaacccgcatcatgaccggcgccgacgtggccgggatggtggtgatc
gccgagatcgtcgccggacgcagggccggaatgtcggtggacttcgccgatcaccacctg
cccgagatcggcgtgaccacacaggcgacgtcgtcgatcatcgacgacctgtcgcgcccg
cgcgagaccatcgtctccggacgttcccccgcctggctgagcgcgtgccgggaattgcgt
accgcactggccgagcacactcccacgatcgtcgtcggcgagaccggcgccggaaagttc
accctggtcaccgagctgttccacgcgctgttcgacgacgcccgcagcatcagtgtcgac
gccgaagaatttgccgcgcactatgattcggcggaagtggagaagctcatcaatccgggt
tcggcgccgacgctctacatcctgcgcaacatcgaccaatgcaccaccgatgccgccgag
caggccgagcggtttctcaccacgctcgacggcgtcgacgggccggtctggtacatcgcg
acgctctcggactcggccctcgactccgacctgcccttccggcagatgctcggacacttc
ggtgcctcggtcaacatcccgccgctgcgctttcgcaccgacgacatcgatcaggtgacg
gcgtcgctgctgcgattactcgcccccgagcgcaaggtgcggatcagcccggaggcgcgt
cgggtcatcaaccggtattcgtggccgcgcaacgtgtcccagttgcacgaagccctcgtt
cacgcgctccgccgacgcccggtcggcgagatccaggcgagtgatctgcccggctactgc
cagagcttcgcgcagcggaccctgaccccggtggaatcggccgaacgcgacctgatcgtc
tcggcgctgcgggccaacgacggaaatcgttccgccgcagcggaacagctcggtatggcg
cgatcgagcctgtaccgcaaactccgcacgtacgggatcgccggctga
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