Gordonia pseudamarae: GII33_05115
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Entry
GII33_05115 CDS
T07482
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gpd
Gordonia pseudamarae
Brite
KEGG Orthology (KO) [BR:
gpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gpd03016
]
GII33_05115
Enzymes [BR:
gpd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GII33_05115
Transfer RNA biogenesis [BR:
gpd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GII33_05115
Prokaryotic type
tRNA splicing ligases
GII33_05115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Motif
Other DBs
NCBI-ProteinID:
QHN25434
LinkDB
All DBs
Position
complement(1177862..1179058)
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AA seq
398 aa
AA seq
DB search
MSTTFPVPLSGAAASTLLWADEESIEHDARNQLRRVSNLPWVHGVRVMPDVHVGKGATVG
SVIAMRDAVCPAAVGVDIGCGMSAVRTDLTAADLPDDLSGIRSAIEAVVPVGFRSHERPV
NVRTLRVGRGWDAFWGRFTDLHHGVRQLDMRAGKQLGTLGGGNHFIEVCLDDEDAVWIML
HSGSRNIGKELAERHMSIAAKLPHNAALPDRDLAVFLTGTPEMDAYRHDLDWAQEYAARN
RQVMLTLVCNAVRAGFPTRTVRFDDPISCHHNYVATETIDGLELLVTRKGAIRAGAGDLG
LIPGSMGTGSYVVRGLGSEQSFFSASHGAGRRMSRSKARKLFTADDLIAQTRGVESRKDP
GVVDEIPAAYKDIDEVIAAQTDLVEVVAHLRQVVCVKG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccacctttccggtccccctgtccggcgccgccgcgtccaccctgctctgggcg
gacgaggagtcgatcgagcacgatgcccgcaatcagctccgccgcgtgtcgaatctgcca
tgggtccacggggttagggtgatgcccgatgtccacgtcggcaagggcgcgaccgtcggt
tcggtgatcgcgatgcgcgatgccgtgtgcccggcggccgtcggtgtcgacatcggctgc
ggaatgtcggcggtgcgcaccgatctcaccgccgccgatctgcccgacgacctgtcgggc
atccggtcggcgatcgaggccgtcgtgccggtcggtttccgctcccacgagcggccggtg
aacgtgcgaaccctgcgcgtcggccgcggctgggatgccttctggggccgcttcaccgac
ctccatcacggtgtgcggcaactcgatatgcgagccggaaagcaactcggcaccctcggc
ggcggcaatcacttcatcgaggtgtgcctcgatgacgaggacgcggtgtggatcatgctg
cattccgggtcgcgcaacatcggcaaggaactggccgaacggcatatgtcgatcgccgcg
aagctgccgcacaacgccgcgctgccggaccgggatctggcggtgttcctcaccgggaca
ccggagatggacgcctatcggcacgacctcgactgggcgcaggagtacgccgcccgcaac
cggcaggtgatgctgaccctggtctgcaacgcggtacgcgccggcttccccacccgcacg
gtacgtttcgatgatccgatcagttgccaccacaactatgtggcgaccgagacgatcgac
ggcctggaactgctggtgacccgcaagggcgccatccgggcgggtgcgggcgatctggga
ctgatccccgggtcgatgggtaccgggtcgtacgtggtgcggggcctgggcagcgaacag
tcgttcttctccgcatcgcacggtgcgggccggaggatgagccggtccaaggcacgcaag
ctgttcaccgccgacgacctgatcgcccagacccggggcgtggagtcccgcaaggacccc
ggtgtcgtcgacgagataccggcggcctacaaggacatcgacgaggtcatcgccgcccag
accgacctcgtcgaggttgtcgcgcacctgcgtcaggtggtgtgtgtgaagggctga
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