Gordonia pseudamarae: GII33_05480
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Entry
GII33_05480 CDS
T07482
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gpd
Gordonia pseudamarae
Pathway
gpd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GII33_05480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpd03400
]
GII33_05480
Enzymes [BR:
gpd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
GII33_05480
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
GII33_05480
DNA repair and recombination proteins [BR:
gpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GII33_05480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
QHN25494
LinkDB
All DBs
Position
1259315..1260244
Genome browser
AA seq
309 aa
AA seq
DB search
MPELPEVGAIAAFLDDHITGLPIRRVDVASLAVLKTADPPYTALTGRTVVSVSRIGKYLL
IRTVPGDYDAGDDEMGDDGAGGGDHDAVIYLVIHLSRAGWLRWSEKLSRVPPRPGGKGPI
ALRVHCGLPGEGFDVTEAGTQKRLAVWVVRDPKDVDRIATLGPDALGVGRERFGEILAGS
HARIKNLLTDQRVIAGIGNAYSDEILHVAALSPFANANALDDAGVDVLYAAMRSVLTDAV
ARLGDASVATMKSEKRTGLRVHARTGLPCPECGDTIREVSFADRSFQYCPACQTGGKVLA
DRRMSRLLK
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactacccgaggtcggcgcgatcgccgcctttctcgacgatcacatcaccgga
ctgcccatccgccgggtcgacgtcgcctccttggcggtgctcaagaccgccgacccgccg
tacacggcgctgaccggccggaccgtcgtatcggtgagccggatcggcaagtacctgctc
atccgcaccgtcccgggcgactacgacgcaggggacgatgagatgggggatgacggagca
gggggcggcgatcatgatgcggtgatctacctggtcatccatctgtcgcgggccggttgg
ctgcgctggagtgagaagctgtcgcgggtgccgcccaggcccggaggtaagggcccgatc
gcgttgcgcgtgcattgcgggctgcccggtgaggggttcgacgtcaccgaggccggtacc
cagaagaggctggcggtctgggtggtgcgggacccgaaggacgtcgaccggatcgcgacg
ctgggcccggacgcgctcggcgtcgggcgcgaacggttcggagagatccttgccgggtcg
cacgcccggatcaagaacctgctcaccgatcagcgtgtgatcgccggcatcggcaacgcc
tactccgacgagatcctgcacgtggccgccctgtcaccgttcgcgaacgcgaacgccctc
gacgacgccggggtcgacgtgttgtacgccgcgatgcggtcggtgctcaccgatgccgtg
gcccggctcggcgatgcgtcggtggcgacgatgaaatcggagaagaggacggggttgcgg
gtgcacgcccgcaccggcttaccgtgcccggaatgcggcgacaccatccgtgaggtgtcc
ttcgccgaccggtcgttccagtactgcccggcgtgtcagaccggcggcaaggtcctcgcc
gaccgcaggatgtcgcggcttctcaaatag
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