Gordonia pseudamarae: GII33_08350
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Entry
GII33_08350 CDS
T07482
Name
(GenBank) AMP-binding protein
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
gpd
Gordonia pseudamarae
Pathway
gpd00061
Fatty acid biosynthesis
gpd00071
Fatty acid degradation
gpd01100
Metabolic pathways
gpd01212
Fatty acid metabolism
gpd02024
Quorum sensing
gpd04146
Peroxisome
Module
gpd_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
gpd00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
GII33_08350
00071 Fatty acid degradation
GII33_08350
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
GII33_08350
09145 Cellular community - prokaryotes
02024 Quorum sensing
GII33_08350
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
gpd01004
]
GII33_08350
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gpd04147
]
GII33_08350
Enzymes [BR:
gpd01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
GII33_08350
Lipid biosynthesis proteins [BR:
gpd01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
GII33_08350
Exosome [BR:
gpd04147
]
Exosomal proteins
Exosomal proteins of breast milk
GII33_08350
Exosomal proteins of breast cancer cells
GII33_08350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
QHN25971
LinkDB
All DBs
Position
complement(1901580..1903364)
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AA seq
594 aa
AA seq
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MDQYSTPSDYTVDEKATTVDSLVRHRAETPDAVLLRKLSGSDWVDVTAKTFADEVDAVAK
GIIASGINPGDRVALLSSTRYEWTVVDYAIWRAGAVTVAIYDTSAPDQVQWILEDSATRL
LIVEATKHRIQHQEVIAGAAALGETLVIDEGALATLTERGNSVDAAELDARHAGTTASDP
ATLIYTSGTTGRPKGVALTHANLLAESAACAHSVGPGLVEGNTTLLFLPLAHVFARAIEV
GCIENKVILGHTSDIPNLVAHLDKFKPHYVLSVPRVFEKVYNSAKQKAYDGGKGSIFEKA
SVTAIEYSKARDTGGAGLVLKLKHALFDKLVYGKLRAALGGNCIGAVSGGAPLGERLGHF
FRGVGIPVYEAYGLTETSAGITANNVADQHVGSVGRPVPGAAAAIAEDGEILLRGPMVFG
GYWQNPDATADSIRDGWFHTGDIGKLVDGFLYITGRKKEIIVTAAGKNVSPAQLEDTIRA
HPLVSQCLVVGDKKPFIAALITLDQEVIPGWLERHQLPADTPLSALSTNEKILAELQEAV
DSANKTVSKAEAIKKFAVLDTDFTIETGELTPTLKLKRNVIHDSYKIAIADLYT
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggatcagtactcgaccccgtccgactacacggtcgacgagaaggcgacgacagtggac
tcgctggtgcgtcaccgtgccgagaccccggacgccgtcctgctgcgcaagctgtcgggc
tccgattgggtcgacgtcaccgccaagacctttgccgacgaggtggacgcggtcgccaag
ggcatcatcgcctcgggaatcaaccccggcgaccgggtggcgttgctgtcctcgacccgc
tacgagtggaccgtcgtcgactacgccatctggcgcgcgggcgcggtcaccgtggcgatc
tacgacacgtccgcccccgaccaggtccagtggatcctcgaggactccgccacccgactg
ctgatcgtcgaggcgaccaagcatcgcatccagcaccaggaggtgatcgcgggcgcggcg
gccctcggcgagaccctggtcatcgatgagggcgcactcgcgaccctcaccgagcgaggc
aactccgtcgacgccgccgaactcgacgcccgccacgccggcaccaccgccagtgacccg
gcaacgctgatctacacctccggcaccaccggacgccccaagggcgtggcactgacccac
gccaacctgctcgccgaaagcgctgcctgcgcccactcggtggggccggggctggtcgag
ggaaacaccacccttctgttccttcccctggcgcatgtgttcgcccgcgccatcgaggtc
ggctgcatcgagaacaaggtgatcctcggtcataccagtgacatcccgaacctggtggcc
catctcgacaaattcaagccgcactatgtgctgtcggtgccgcgtgtgttcgagaaggtc
tacaactcggccaagcagaaggcgtacgacggcggcaagggcagcatcttcgagaaggcc
tccgtcacggccatcgagtacagcaaggcccgcgacaccggcggggccgggctcgtgctc
aagctcaagcacgccctgttcgacaagctcgtctacggcaagctgcgcgcggcgctcggc
ggcaactgcatcggcgcggtgtccggcggcgcaccgctcggcgagcgcctcggtcacttc
ttccgtggcgtcggtatcccggtgtacgaggcctacggcctcaccgagaccagcgcgggc
atcaccgccaacaacgtcgccgaccagcacgtcggctctgtcggccgaccggttcccggc
gccgcggcggccatcgccgaggacggcgagatcctgctccggggcccgatggttttcggc
ggctactggcagaacccggacgccacggccgattccatccgggacggctggttccacacc
ggggacatcggcaagctcgtcgacggcttcctgtacattaccggccgcaagaaggagatc
atcgtcaccgcggccggcaagaacgtctccccggcccagctcgaagacaccatccgggcc
cacccgctggtgagccagtgcctggtggtcggcgacaagaagccgttcatcgccgcactg
atcacccttgatcaggaggtcatccccggctggctcgaacgccaccagttgccggccgac
accccgctgagtgcgctgagcaccaacgagaagatcctcgccgaattgcaggaggccgtc
gattccgccaacaagacggtgtccaaggccgaggccatcaagaagttcgcggtcctcgac
accgacttcaccatcgagaccggtgagctgacgcccacgctcaagctcaagcgcaacgtg
atccacgactcgtacaagatcgccatcgccgacctgtacacgtag
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