Gordonia pseudamarae: GII33_08355
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Entry
GII33_08355 CDS
T07482
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gpd
Gordonia pseudamarae
Pathway
gpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GII33_08355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpd03019
]
GII33_08355
03009 Ribosome biogenesis [BR:
gpd03009
]
GII33_08355
Enzymes [BR:
gpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GII33_08355
Messenger RNA biogenesis [BR:
gpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GII33_08355
Ribosome biogenesis [BR:
gpd03009
]
Prokaryotic type
rRNA helicases
GII33_08355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
HEM4
Cas3-like_C_2
CMS1
adh_short
Mur_ligase_M
Motif
Other DBs
NCBI-ProteinID:
QHN28569
LinkDB
All DBs
Position
1903717..1905438
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AA seq
573 aa
AA seq
DB search
MDDRVLEAISDVGYESPSPIQAATIPILMSGRDVVGLAQTGTGKTAAFAIPILSRLDDSA
RKPQALILAPTRELALQVAEAFGKYSAHLPKVKVLPIYGGQSYVVQLNGLKRGAQVIVGT
PGRVIDHLDRGTLDISELEFLVLDEADEMLTMGFAEDVERILADTPDSKQVALFSATMPR
AISRLAQQYLKDPQEITVKAKTATASNIAQRYLQVSHQRKLDALTRFLEVEQFDAMIVFV
RTKQATEELAEKLRSRGFSAVAINGDLAQAQRERTINQLKNGSIDILVATDVAARGLDVD
RISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRERHLLRAIEKATRSTLTEIG
LPSVEDVNAQRVAKFAESITENLSSDHLDLFRKLIEDYARDNDVTMADIAAALALETRDG
GFLMAPDPPQRERGERGERPERRERAPRRPGANFATYRIAVGRVHRVSPGAIVGAIANEG
GLTRGDFGNISIRDDFSLVELPDDLDSETLASLRHTRIGKNPIDIRRDQGPPRARGGAKR
AAQGARGYGRDGARRSDSWGKRGSPKVAGHPRG
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atcgatgaccgagtgctcgaggccatctccgatgtcggctacgagtcgccctcgccgatt
caggcggcgacgatcccgatcctgatgtccggtcgcgacgtcgtcgggctggcgcagacc
ggcaccggcaagacggcggccttcgccattcccatcctgtcgcggctcgatgactccgcg
cgcaagccgcaggccctgatcctggcgccgacccgcgagctcgcgctgcaggtggccgag
gcattcggcaagtactcggcccatctgcccaaggtgaaggtgctgcccatctacggcggg
cagagctacgtggtccagctcaacggcctcaagcgcggcgcacaggtcatcgtcggcacg
ccggggcgcgtcatcgatcacctcgaccggggtaccctcgacatctccgaattggagttc
ctggtcctcgatgaggccgacgagatgctcacgatgggtttcgccgaggatgtcgaacgc
attctcgccgacacgccggactccaagcaggtcgcgttgttctccgcgacgatgccgcgg
gccatttcccggctggcgcagcagtacctcaaggatccgcaggagattacggtcaaggcc
aagaccgcgaccgcgtccaacatcgcccagcgttatctgcaggtctcgcaccagcgcaaa
ctcgatgccctgacccgtttcctggaggtcgagcagttcgacgcgatgatcgtgttcgtc
cgcaccaaacaggccaccgaggagttggccgagaagctgcgctcgcgtggattctcggcg
gtggcgatcaacggcgatctggcgcaggcgcagcgcgaacgcaccatcaaccagctcaag
aacggctccatcgacatcttggtggccaccgatgtcgcggcccgcggcctggacgtggac
cggatctcgcatgtggtcaactacgacatcccgcacgacaccgagtcctatgtgcaccgg
atcggccgcaccgggcgcgcgggaaggtcgggcaacgcgctgctgttcgtctcgccgcgt
gaacggcatctgttgcgggccatcgagaaggccacacgttctacgctcaccgagatcggg
ctgcccagtgtggaggacgtcaacgcccaacgcgtggcgaagttcgccgagtcgatcacc
gaaaacctgagctcggatcacctggatttgttccgcaagctgatcgaggactacgcccgc
gacaacgatgtgacgatggccgacatcgcggcggcgctcgcactcgaaacccgtgacggc
ggcttcctcatggcacccgacccgccgcagcgcgaacggggcgagcgcggggagcggccc
gagcgtcgtgagcgcgcgcccaggcggcccggggccaatttcgccacctaccgcatcgcg
gtcggccgggttcaccgggtgtcgccgggtgcgatcgtcggggcgatcgccaacgagggc
ggactcaccagaggtgatttcggtaacatttccatccgcgacgatttcagtctcgtggag
ctgcccgacgatctcgactccgagaccttggcgtcactccggcacaccaggatcggcaag
aaccccatcgacatccgccgcgatcagggtccgccccgagcccgtggtggtgccaaacgt
gcagctcagggtgcacgagggtacggccgtgacggagccaggcgatcggactcgtggggc
aaacgcggcagccccaaggtggccggacacccgcgcggctga
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