Gordonia pseudamarae: GII33_09710
Help
Entry
GII33_09710 CDS
T07482
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gpd
Gordonia pseudamarae
Pathway
gpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GII33_09710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpd03019
]
GII33_09710
Messenger RNA biogenesis [BR:
gpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GII33_09710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
QHN26204
LinkDB
All DBs
Position
2202651..2204546
Genome browser
AA seq
631 aa
AA seq
DB search
MTTPPRRRRSASRQAGPPSPGSVAENTTRAARQEADPQPPESGAGGHGRHERGSGAQPQA
QTQSQTTQTAPDRMGPPPKLRRGGLRVVALGGIGEVGRNMTVFEYDGRLLIVDCGVLFPE
DAQPGVDLILPDFRYIEDRIDDVEAVILTHGHEDHIGAVPFLLRLRGDIPVVGSTFTLAL
LEAKCREHRQRPTLVRVTEGERTQHGPFDCEYFAVNHSIPDAIAVAIRTEAGLTLHTGDI
KLDQLPLDGRLTDLAGFSRLGDEGVDLFLVDSTNAEVPGFVTPERQIGGVLDQVIGKARQ
RVIVASFASHVHRIQQIIDVAHAHNRRVTFVGRSMVRNMQIAQDLGYLSVPDGVVVDIDT
AATLPDHRVVLISTGSQGEPLSALSRMARGEHRQINIRADDLVVLASSLIPGNENSVFAV
VNGLAKRGATVITQQSAKVHVSGHASAGELLYLYNAVRPSNVMPVHGEWRHLRANGDLAI
ATGVAPGRVALAEDGVVVDLVDGQATITGRVPVGYVYVDGLSVGDVGESTLSERLVLGEG
GFIAITVAVDPETGRAVSPPEISGRGFSDDPAALKDAADLVGKALDTLYAEGVTDTHRIA
QTIRRTVGRWVSEKYRRRPMIVPTVLAVRGN
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaccaccccggcgcaggcgcagcgcctcacgacaggctggaccgccgagtccc
ggttcggtcgccgagaacaccacccgggccgcccgccaggaggcggacccgcagccgccc
gaatccggtgccggcggccacggcagacatgagcggggcagcggcgcgcagccgcaggcc
cagacccagtcccagaccacccagaccgcacccgaccggatgggtccgccgcccaagctg
cggcgcggcggactgcgggtcgtcgcgctcggcggtatcggcgaggtcggccgcaatatg
accgttttcgagtacgacggccggctgctcatcgtcgactgcggtgtgctgttccccgag
gacgcgcaacccggcgtcgacctgatcctgcccgacttccggtacatcgaggaccgcatc
gacgacgtcgaggcggtgatcctcacccacggccacgaggaccacatcggcgccgtgccg
ttcctgctgcgcctgcgcggcgacatcccggtcgtgggttccacgttcacactcgcgttg
ctggaggccaagtgccgcgagcatcggcagcggcccacgctggtgcgggtcaccgagggc
gaacggacccagcacgggccgttcgattgtgagtacttcgcggtcaaccactccattccc
gacgctatcgccgtcgcgattcgcaccgaggccggtctgacactgcacaccggcgacatc
aagctcgaccagctgccgctcgacggccgcctcaccgacctcgccggattcagccgtctc
ggcgacgagggcgtcgacctgttcctggtggactccaccaacgccgaggtgccgggtttc
gtcacccccgaacgtcagatcggcggcgtgctcgatcaggtcatcggcaaggccagacag
cgggtcatcgtggcctcgttcgccagccacgtgcaccgcatccagcagatcatcgacgtg
gcgcacgcccacaaccggcgcgtcacgttcgtcggccggtcgatggtccgcaacatgcag
atcgcccaggacctcggttacctgtcggtgcccgacggggtggttgtcgatatcgacacc
gccgccacactgcccgaccaccgggtggtgctgatctccaccgggtcgcagggtgagccg
ctgtcggcgctgtcgcggatggcacgcggggaacaccgccagatcaacatccgcgccgac
gacctggtggtgctggcatcctccctcatcccgggcaacgagaactcggtgttcgcggtg
gtcaacggtctggccaagcgcggtgccacggtcatcacccagcagtcggcgaaggtgcac
gtgtccgggcacgcctcggccggtgaactgctgtacctgtacaacgcggtgcggccgagc
aacgtgatgccggtgcacggcgagtggcggcatctgcgcgccaacggcgacctggccatc
gccaccggtgtcgcaccggggcgggtggcactggccgaggacggcgtggtggtcgacctg
gtcgacggacaggccaccatcaccggtcgcgtgccggtgggctacgtgtacgtcgacggc
ctgtcggtgggcgatgtgggtgagtcgacgttgtcggagcgtctggtgctcggtgagggc
ggtttcatcgcgatcaccgtggccgtcgatcccgagaccggacgcgcggtcagcccgccg
gagatctccggccgtggtttctccgacgatccggccgccctcaaggacgccgccgatctg
gtcggcaaggcgctggacacgctgtacgccgagggcgtcaccgacacgcaccgcatcgcg
cagaccatccgccgaaccgtcggccgctgggtgtcggagaagtatcgtcgccggccgatg
atcgtgccgaccgttctggcggtccgcggcaactga
DBGET
integrated database retrieval system
