Gordonia pseudamarae: GII33_09890
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Entry
GII33_09890 CDS
T07482
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
gpd
Gordonia pseudamarae
Brite
KEGG Orthology (KO) [BR:
gpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpd03019
]
GII33_09890 (hrpA)
Enzymes [BR:
gpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GII33_09890 (hrpA)
Messenger RNA biogenesis [BR:
gpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GII33_09890 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
T2SSE
ABC_tran
NACHT
AAA_30
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QHN26231
LinkDB
All DBs
Position
complement(2245055..2249074)
Genome browser
AA seq
1339 aa
AA seq
DB search
MSAASKTPSGPTPAIPSADTPDPRGTVSALRRHLPELTIADEFRFRRRLDKLGRSPKPQA
VQSITADIGAARDRIEARRGRLPRIDYPAELPVSAARADIAAAIEAHQVVVVAGETGSGK
TTQLPKICLEAGRGIRGTIGHTQPRRIAASSVAKRIADETGTEIGDAVGYSVRFTDRSGA
NTLVKVMTDGILLREISTDPMLRAYDTLIIDEAHERSLNIDFILGYLKQLLPRRPDLKVI
ITSATIEPGRFAAHFAVPGNPEVPIIEVSGRTYPVEVRYRPLTSRDAPDSEHDHADLDQI
QGIDAAITELWAHERGDILVFLPTERDIRDTADALKRRVASGAEIVPLFARLSIADQQKV
FSPSDGRRIVLSTNVAETSLTVPGIRYVIDVGTARISRYSTRTKVNRLPVEPVSQASARQ
RAGRCGRVAPGICIRLYGEDDFEARDAFTDPEILRTNLAAVILQMASLRLGDIAEFPFVQ
APDPRAIRDGLGTLLELGAISETPAGSQTQPAATVETDTRRRRSRGPQLTEVGRTMARLP
VDPRLARMLVEAHTLGCLDHVLVIASALSLPDVRERPADCREAADTAHRRFVADKSEFLG
HLMLWKYLNDQRKELSGNQFRRMCEREFLHFLRIREWRDLHAQLTRIVRDLDWQTPDGEV
DPDAVHRSVLSGLLGNIAARNGDTREYSGARGTTLAIFPGSALAKKPPAFIMAAEILETS
RLFAHTVAAVDPLWAERLAGDLVKRTYSEPHWSQRRGAAMAYEKVTLYGVTLVARRRVNY
GPIDPVISRELFIRHALVDGEWTTAHEFFQKNRDLLDAVDDIEQRIRRRDISITEDQLFD
FYDTRIGADCVSTRHFDTWWKTARRADPGLLDLDPAQFATAVPNADKDFPPAWRQGEATL
ELRYRFDPTVDDDGVTVVIPEPLLPHIRSAGFDWLVPGLRGEVATELIKTLPKAIRKTMA
PASRFADLALSRLVPRSEPLAAGLARELSVITGSTIAPTDFTPAALPKHLVMNFAVVDGR
GRQIASGRSLPELRRRLAAGGDTRPATIQTYTDWTADGIGTLAESTTTTVAGQHITHYPA
LRAVPGASRSGVQVTAATSAAARDRMLLVAVAALLDHRIPILTPKITAGLDPLSRLSLSQ
SPYRDRDRMVADCTYRAIRDAVAAHPAAVSGVRSPDDFARLCDTLSPQVRSAAPDYFSAA
VAALREVAPLRRLIDGHAGSAAADDVAEQLENLVFDGFIAATPLQALRQLPRYLQAAQQR
LEALPAGADRDAQGLRTIDRVIEHWNARLAKVPDARRDAVNDAAQWLVEELRVGLFAQRL
GTAYPVSEKRIIKAIDALR
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcagcctcgaaaaccccatccggtcccacgccggcaatcccctcggcggacaca
ccggaccctcgcgggacggtgagtgcgctccggcggcacttgcccgaactgacgatcgcc
gacgaattccggttccggcgacggctcgacaagctcggtcgcagcccgaaaccacaggct
gtgcagtcgatcacggcggacatcggcgcggcccgggaccggatcgaggcccgtcgtggg
cgcctgccacgtatcgactatccggccgaactcccggtcagtgccgcgcgcgcggacatc
gccgccgccatcgaggcgcatcaggtggtggtggtggccggcgagaccggctcgggcaag
accactcagctaccgaagatctgcctggaagccgggcgcggaatccgcggcaccatcggc
cacacgcagccgcgacgcatcgcggcgagttcggtcgccaaacgcatcgccgacgaaacc
ggcaccgagatcggcgatgccgtcggctattcggtgcggttcaccgacaggtcgggcgcc
aacaccctggtcaaggtgatgaccgacggcatcctgctgcgcgagatctccaccgatccg
atgctgcgggcctacgacaccctcatcatcgacgaggcgcacgaacgcagcctcaacatc
gatttcatcctcggctatctcaaacaactgctgccgcgccgccccgacctgaaggtgatc
atcacctcggcgaccatcgaacccggccggttcgccgcgcatttcgccgtccccggcaat
cccgaggtccccatcatcgaggtatccgggcgcacctatcccgtggaggtccggtaccgg
ccgctcacctcacgcgatgcccccgactccgaacacgatcacgccgatctcgaccagatc
cagggcatcgacgccgcgatcaccgaactgtgggcccacgaacgcggcgacatactggtg
ttcctgcccaccgaacgcgacatccgcgacaccgccgatgccctcaaacgccgggtcgcc
tcgggcgccgagatcgtgccattgttcgcccggctgtcgatcgccgaccagcagaaggtg
ttctccccctccgacggccggcgcatcgtgctgtccaccaatgtcgccgaaacctcgctc
accgtgcccggtatccgatatgtcatcgacgtcggcacggcccgtatctcccgctactcc
acccgcaccaaggtgaatcggctgcccgtcgaaccggtctcacaggccagtgcccgccag
cgggcgggccggtgcgggcgtgtggcacccggcatctgcatccggctctacggcgaggac
gacttcgaggcccgcgatgccttcaccgatccggagatcctgcggaccaacctggccgcg
gtgatcctgcagatggcgtccctgcgtctgggcgacatcgccgaattcccgttcgtgcag
gccccggacccacgggccatccgtgacggactcggtacgttgctcgaactgggtgcgatc
agcgaaacgcccgcgggatcgcagacacagcccgcggcgaccgtcgagaccgacacgcgg
cgacgccgctcgcgtggtccacagctcaccgaggtgggccgcacgatggcacggttgccc
gtcgacccacgactggcccggatgctggtcgaggcccacacgctcggctgcctcgaccac
gtgctcgtgatcgcctcggcgctgtcgcttcccgacgtgcgcgaacgtcccgccgactgt
cgggaggccgccgacaccgcacaccgcagattcgtcgccgacaagtccgagttcctcggt
cacctgatgctctggaagtatctgaatgatcaacgaaaagagttgtccggtaatcaattc
cgcaggatgtgcgagcgcgagttcctacatttcctgcgtatccgcgaatggcgtgacctg
catgcccaactgacgcggatcgtgcgcgatctggactggcagacacccgatggggaggtc
gaccccgatgccgtgcaccggtcggtcctgtcaggcctgctgggcaacatcgccgcccgt
aacggcgacacccgcgagtactccggcgcccggggcaccacactggccatctttccgggg
tcggcgctggccaagaagccgcctgccttcatcatggccgccgagatcctggagacctcc
cggctgttcgcgcacacggtggccgccgtcgatccgctctgggccgagcgactggccggt
gacctggtcaaacgcacctacagcgaaccgcactggtcgcagcgtcggggtgcggcgatg
gcctacgagaaggtcaccctgtacggggtcaccctcgtggcccggcgccgcgtcaactac
ggccctatcgacccggtcatctcccgggaactgttcatccggcatgctctcgtggacggg
gaatggaccaccgcacacgagttcttccagaagaaccgcgatctgctcgacgcggtcgac
gacatcgaacaacgcatccgccgccgtgacatctcgatcaccgaggatcagctcttcgac
ttctacgacaccaggataggtgccgactgcgtatccacccggcacttcgacacctggtgg
aagactgcccgccgcgccgaccccggcctgctcgatctggacccggcacagttcgccacc
gcggtacccaacgccgacaaggactttccgcccgcatggcggcagggtgaggcgacgctg
gagttgcggtaccggttcgatcccaccgtcgacgacgacggcgtcaccgtggtgatcccc
gagccactgctgccccacatacggtcggccgggttcgactggctggtccccggcctgcgg
ggcgaggtggcgaccgaactgatcaagacgctgcccaaggcgatccgaaagacgatggcc
ccggcgagccggtttgccgatctcgcgctctcccgcctggtcccgcggtccgaaccactc
gcggcgggcctggctcgcgagttgtcggtgatcaccggctccaccatcgcacccaccgac
ttcacgcccgcggcgctgcccaaacacctggtgatgaacttcgccgtcgtcgacggccgc
ggacgccagatagcttcgggccggtcgttgccggagttgcgcaggcggttggccgccggt
ggtgacacccggcccgcgacgatccagacctacaccgactggaccgccgacgggatcgga
acgctggccgagtccaccaccacaaccgttgccggacaacacatcacccactacccggcg
ctgcgtgccgtgccgggcgcgtcgcggtccggcgtacaggtcaccgccgccacctctgct
gccgcacgggaccgcatgctgctcgtggcggtggccgcgctgctcgatcacaggattccg
atactcacgccgaagatcaccgcgggactcgacccgctgagcagactgagtctgagccag
agcccttaccgcgatcgtgatcggatggtcgccgactgcacctaccgggcgatccgcgat
gccgtcgccgcccaccctgcggcggtgtccggggtccgctcacccgatgacttcgcccgc
ctgtgcgacacattgagcccacaggttcggtcggccgcaccggactacttctcggcggcg
gtcgcggcactgcgggaggtcgccccgctgcgcaggctcatcgacgggcacgccggctcc
gcggccgccgacgatgtcgcagaacaactcgagaacctggtcttcgacggcttcatcgcc
gccaccccgctgcaggcactgcggcagttgccccgctacctgcaggccgcacagcagcga
ctggaagcgttacccgccggcgccgaccgggacgcgcagggcctgcgcaccatcgaccgg
gtcatcgaacattggaacgcgcggctggcgaaggtgccggacgcacgccgggacgccgtc
aacgacgccgcgcagtggctggtggaggagctgcgcgtcgggctgttcgcccaacgcctg
ggcaccgcgtacccggtgtccgagaagaggatcatcaaggccatcgacgcactgcgctga
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integrated database retrieval system
