Gordonia pseudamarae: GII33_12190
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Entry
GII33_12190 CDS
T07482
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
gpd
Gordonia pseudamarae
Pathway
gpd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GII33_12190 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpd03400
]
GII33_12190 (recD)
Enzymes [BR:
gpd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GII33_12190 (recD)
DNA repair and recombination proteins [BR:
gpd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GII33_12190 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
UvrD_C_2
Viral_helicase1
AAA_11
RecD_N
AAA_22
PhoH
UvrD-helicase
Helicase_RecD
Mg_chelatase
SH3_13
PIF1
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QHN26607
LinkDB
All DBs
Position
complement(2769722..2771755)
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AA seq
677 aa
AA seq
DB search
MTVDIAGRDRFADDLVLGADPVLEPWNRAGLLSAADLHLVDRLGRLSGERLSDTAKVGVA
LAMRAVRRGSTCLALDQVTELLASTESVAQGSVAQESVVDVRIPSGRELFEALAVCPLVT
GSPAGPLRPLVLVDSEDGPLLYLHKYFRQEHIIRSVLDERAARVPDVDPDAVREAVYAAF
GSPDGDSPDGDSPDKDAEAGSPRVDARQRLAGFVAAGRWITVLAGGPGTGKTFTVARILA
TLEHLSEHRLRIGLCAPTGRAAAQLESSVASYRRDTTPIRAVTVHSLLGWRPGANPRYNR
TNTLPHDVVVVDETSMLSMTAMSYVLDAIRPDARIIFVGDPHQLESVDAGAVLADLVDRV
DAGEATTTDAGRARVRDAIASAGMTMADDVGDEPDPDVDPDSVVDDADLARISAGVITLR
RGHRNSPGIATLAAAINDGDADRVAELVRSGLPGVVLIDPTGLDPVQTAVTKWGLDLQAA
AEAGDDVAALAALNRHRVLCAHREGRWGVQGWTDQITEWTGTASYLPLTASTAMSQAGRP
VLVTVNDKETDTSNGDCGVVIRDVRATVAPGDPVPLTVAFARGESGVHRVHPARLSDVVP
AYAMTIHRSQGSQYGAVTVVLPPIGSELLTRELLYTAITRAQTEVWIVGTLDVLTAAVDR
RVARASGLRSRIRALGD
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtggatatcgccggccgggaccggttcgccgatgacctggttctgggcgcggac
ccggttctggaaccgtggaaccgggcgggtctgctgtcggcggccgatctgcacctcgtc
gaccggctgggccggttgtcgggtgagcgtctgagcgacaccgccaaggtgggagtggcg
ctggcgatgcgtgctgtccgccgcggatcgacctgcctggccctggatcaggtcaccgaa
ctgctggcgtccacagaatcggttgcccaaggatcggttgcccaagaatcggttgtcgac
gtccggattccgtcggggcgtgaactgttcgaggcgctcgcggtatgcccactggtgacc
ggctcgccggccggaccgctacgccccctggtgctggtcgactccgaggacggcccactg
ctgtacctgcacaagtattttcgccaggaacacatcatcagatcggtgctcgacgagcgg
gccgcccgggtccccgacgtcgaccccgacgcggtgcgcgaggccgtatacgcggcgttc
ggcagccccgacggggacagtccggacggggacagtccagacaaggatgcggaggccggt
tcgccgcgggtcgacgcccgccagcgactggccgggttcgtggcggcgggccgctggatc
accgtcctggccggtggtcccggaaccggtaaaaccttcacggtcgcacggattctcgcg
accctggaacatctgtcggagcatcggctgcggatcggcttgtgcgcccccaccgggcgt
gccgccgcacaactcgaatcgtccgtcgcctcgtaccggcgcgacaccacgccgatccgg
gcggtcaccgtgcactcgctgctggggtggcggcccggcgccaatccccgctacaaccgc
accaatacgctgccccacgacgtggtggtggtggacgagacgtcgatgctgtcgatgacg
gcgatgagttacgtgctcgacgcgatccggcccgacgcgcggatcattttcgtcggagac
ccgcatcagctcgaatccgtcgacgccggtgccgtgctcgccgacctcgtcgaccgggtg
gacgcgggggaggccaccacgaccgatgccggacgcgcacgggtccgcgatgcgatcgcg
tcggccgggatgacgatggccgacgatgtgggcgatgagcccgacccggatgtcgaccct
gattcggttgtcgatgatgcggatctggccaggatcagtgctggtgtcatcacgttgcgc
cgtgggcaccgcaacagtcccggcatcgccacgctggccgccgccatcaacgacggcgac
gccgaccgggtcgccgaactcgtccggtcgggcctgcccggcgtggtgctcatcgatccg
accggactcgatccggtacagaccgccgtgacgaagtggggcctggatctgcaggccgcc
gccgaggccggtgacgatgtggcggcgctggccgcgctcaaccgccatcgtgtgctgtgc
gcgcaccgcgagggccgctggggagtgcagggctggaccgaccagatcaccgagtggacc
ggtacggcctcgtacctgccgctgacggcgtcgaccgccatgtcgcaggccgggcggccg
gtcctggtgacggtcaacgacaaggaaaccgacacctccaacggcgactgcggtgtggtg
atccgcgatgtccgggcaaccgttgcgccgggtgatccggttccgctcaccgtcgctttc
gctcgtggcgagtcgggggtgcaccgggtgcatccggcgcgcctgtcggatgtggtgccc
gcgtacgcgatgaccatccaccgcagtcagggcagccagtacggtgcggtgacggtggtg
ctgccgccgatcggttccgaactgctcacccgagagctcttgtacacggccatcacccgc
gcgcagaccgaagtctggatagtgggcaccctcgacgtcctcacagcggcagtcgacagg
cgcgtggcgcgcgccagcggtctgcggtcccggatccgcgcactcggagactga
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