Gordonia pseudamarae: GII33_13280
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Entry
GII33_13280 CDS
T07482
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gpd
Gordonia pseudamarae
Pathway
gpd03030
DNA replication
gpd03430
Mismatch repair
gpd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GII33_13280 (dnaE)
03430 Mismatch repair
GII33_13280 (dnaE)
03440 Homologous recombination
GII33_13280 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gpd03032
]
GII33_13280 (dnaE)
03400 DNA repair and recombination proteins [BR:
gpd03400
]
GII33_13280 (dnaE)
Enzymes [BR:
gpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GII33_13280 (dnaE)
DNA replication proteins [BR:
gpd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GII33_13280 (dnaE)
DNA repair and recombination proteins [BR:
gpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GII33_13280 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
QHN26781
LinkDB
All DBs
Position
complement(3040770..3044318)
Genome browser
AA seq
1182 aa
AA seq
DB search
MTDSFVHLHNHTEYSMLDGAAKVSPLFAEATRLGMSAIGMTDHGNMFGASEFYNSAVKHD
VKPIIGIEAYIAPGSRFDTKRVLWGTRDQKSDDVSGSGAYTHMTMVAANATGLRNLFQLS
SLASIEGQLGKWARMDEDLIAAHAEGIIATTGCPSGEVQTRLRLGHDREALEAAAKWQEI
FGPENFYLELMEHGIEIESRVREGLLDVGRKLGIKPLATNDCHYVTREHASSHEALLCVQ
TGKTLSDPTRFKFDGDGYYLKSAQEMRELWDSQVPGACDSTLEIGERVESYKDVFTHRDR
MPIFPVPDGYTQESWLSREVFAGLEQRRFAGRSVPQEYLDRAEYELRVINQMGFPAYFLV
VGDLIRHALEVGIRVGPGRGSAAGSLVAWALGITNIDPIPHGLLFDRFLNPERVSMPDID
IDFDDRRRGEMVRYATDRWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADKITK
ALPPPIMAKDIPVWGITDPDHERFSEAAEVRTLIETDPDVKKIYDTALGLEGLIRNAGVH
ACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDALEN
IKLNRGIDLDLDKLPLEDDKTYELLARGDTLGVFQLDGAAMRDLLKLMQPTGFEDIVAVL
ALYRPGPMGVNAHTDYAKRKNGLQDIKPIHPELEEPLREILSETFGLIVYQEQIMQIAQK
VAGYSLGQADLLRRAMGKKKKEILDEAYGGFADGMRGNGFSQAAITALWDTVLPFAGYAF
NKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAIYLADCRKLGITVLPPDV
NESQRNFAAVGADIRFGLAAIRNVGTGVVSSILSAREEKGKYTSFSDYLNKIDVVACNKK
VTESLVKAGAFDSLGHPRKGLFLVHSDAIESVLGTKKAEAVGQFDLFGDAGGGADDSMAD
VFAVKVPDEEWDTKHKLALEREMLGLYVSGHPLAGVEHAIAQHTDTSITSLLEGNISDGA
QITIGGIISSVTRRVNKKGEPWAAVTLEDMVGGVEVYFFPRAFQTYGLDIVADNIVLIKA
RVNMRDDSMMISANDLVVPDLATAGATKPVSLTLPARICTPDRVQQLKQVLTRHPGMADV
HVTLVSDQRQTLLRLTESLRVTPSSALMGDLKALLGPSCLTS
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgattccttcgttcacctgcataatcacaccgagtattcgatgctcgacggggcg
gccaaggtgtcgccgttgttcgccgaggccacgcggttggggatgtcggcgatcgggatg
accgatcacggcaatatgttcggggcgtcggagttctacaattcggcggtcaaacatgat
gtgaagccgatcatcgggatcgaggcgtacatcgcgccgggttcgcggttcgacaccaaa
cgggtgttgtggggtacccgcgatcagaagtccgatgacgtgtcgggttcgggtgcctac
acccatatgacgatggtcgcggccaatgcgacgggtctgcggaatctgtttcagctctcc
tcgttggcctcgatcgagggccaactcggcaagtgggcgcggatggatgaggatctgatc
gccgcccacgccgaggggatcatcgccacgacggggtgtccgtcgggtgaggtgcagacc
cggctgcgcctgggccatgaccgcgaagctctcgaagccgccgcgaagtggcaggagatc
ttcgggcccgagaacttctatctggagttgatggaacacggtatcgagatcgaatcgcgg
gtgcgtgagggtctgctcgatgtcggccgcaaactcggcatcaaaccccttgcgaccaat
gactgccactacgtgacccgggagcacgcctcctcgcacgaggcgttgctgtgtgtgcag
accggtaagacgctgtcggatcccacccggttcaagttcgacggtgacggttactacctc
aagtcggcgcaggagatgcgggagttgtgggactcccaggtgccgggggcgtgtgattcg
acgttggagatcggtgagcgtgtcgaatcctataaggatgtgttcactcatcgggatcgg
atgccgatcttcccggttccggacggctatacgcaggaatcgtggctgagccgggaggtg
ttcgcggggctggagcagcgccggttcgccgggcgcagtgtgccgcaagagtacttggat
cgtgccgagtacgagttgcgggtgatcaaccagatggggttccccgcctacttcctggtg
gtcggtgacctgatccggcatgccctggaggtggggatccgggtgggtccgggtcgtggt
tcggctgctgggtcgttggtggcgtgggcgttgggtatcaccaatatcgatccgattccg
catggtctgctgttcgatcggttcctcaaccccgagcgggtgtcgatgcccgatatcgat
atcgacttcgacgatcgtcgccgcggtgagatggtgcgttatgccaccgatcggtggggt
tctgacaaggtcgcccaggtgatcacgttcggcacgatcaaaacgaaggcggcgatcaag
gattcggcgcgggttcagttcgggcagccgggttttgctatcgcggacaagatcaccaag
gcgttgccgccgccgatcatggccaaggacattccggtgtggggtatcaccgaccccgat
catgagcggttctccgaggcagccgaggtgcggacgctgatcgagaccgacccggatgtg
aagaagatctacgacaccgcgctcgggctggaaggtctgatccgtaacgcgggtgtgcac
gcgtgtgcggtgatcatgtcgtccgagccgctcaccgatgcgattccggtgtggaagcgg
gcccaggacggtgcgatcatcaccggctgggactacccctcgtgtgaggccatcggtctg
ttgaagatggacttcttgggtctgcggaacctgacggtgatcggtgacgcgctggagaac
atcaaactcaaccgcggaatcgacctggacctcgacaagctgccccttgaggacgacaaa
acctacgaactcctcgcccgcggcgataccctcggcgtcttccagctcgacggtgcggct
atgcgtgatcttctgaaactgatgcaacccaccggtttcgaggatatcgtcgccgtcctc
gcgctgtaccggcccgggccgatgggtgtgaacgcccacaccgactacgccaaacgcaag
aacggcctgcaggacatcaagccgatccaccccgaactcgaagaaccgctccgggagatc
ctctccgagacgttcggcctgatcgtctaccaggagcagatcatgcagatcgcgcagaag
gtcgccgggtattcgctcggccaggctgacctgcttcgtcgcgcgatgggcaagaagaag
aaggagattctcgacgaggcgtacggcggattcgccgacggcatgcgcggcaacggattc
tcccaggctgcgatcaccgcgctgtgggatacggtgctgcccttcgccggctacgcgttc
aacaagtcgcacgccgccggatacggcctggtttcgttctggaccgcctacctcaaggcc
aactatccggccgagtacatggcgggtctgctgacctcggtcggcgacgacaaggacaag
gccgcgatctatctcgccgactgccgcaagctcggaatcaccgtgctgccaccggatgtc
aacgaatcccagcgcaacttcgccgccgtcggcgccgacatccggttcggtctcgccgcg
atccgcaacgtcggcaccggtgtggtgtcgtcaatcctgtccgcccgcgaggagaagggg
aaatacacgagtttctccgactacctcaacaagatcgacgtggtggcctgcaacaagaag
gtcaccgaatcactggtgaaggcgggtgccttcgactcgctgggtcatccgcgcaagggt
ctgttcctggttcacagtgacgccatcgaatcggttctcggcaccaagaaggccgaggcc
gtcgggcagttcgatctgttcggcgacgccggcggcggcgccgatgattcgatggccgat
gtgttcgcggtcaaggtgcccgatgaggaatgggacaccaaacacaagctggccctcgag
cgggagatgctcgggctgtacgtgtccggccatccgctcgcgggtgtcgagcacgccatc
gcccagcacaccgacacctcgatcacctcgctgctggaaggcaacatttccgacggcgcg
cagatcaccatcggtggcatcatctcgtcggtcacccgccgcgtgaacaagaagggcgag
ccgtgggcggctgtcacccttgaggacatggtcggcggtgtggaggtgtacttcttcccg
cgtgccttccagacgtacgggctcgacatcgtcgccgacaacatcgtgctcatcaaggcg
cgcgtcaacatgcgtgacgactccatgatgatcagcgccaacgacctggtcgtacccgac
ctggccactgccggagccaccaaaccggtcagtctcaccctgcctgcccgcatatgtacc
cccgaccgggtgcaacagctcaaacaggtcctcaccaggcatcccggtatggccgatgtg
catgtcaccctcgtcagcgatcagcggcagaccctgctgcgattgaccgagagcctgcgg
gtcacgcccagttcggcactgatgggcgatttgaaggcgctgttgggaccgagctgcctc
acttcctag
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