Gordonia pseudamarae: GII33_13555
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Entry
GII33_13555 CDS
T07482
Name
(GenBank) DEDD exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
gpd
Gordonia pseudamarae
Pathway
gpd03030
DNA replication
gpd03430
Mismatch repair
gpd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GII33_13555
03430 Mismatch repair
GII33_13555
03440 Homologous recombination
GII33_13555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gpd03032
]
GII33_13555
03400 DNA repair and recombination proteins [BR:
gpd03400
]
GII33_13555
Enzymes [BR:
gpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GII33_13555
DNA replication proteins [BR:
gpd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GII33_13555
DNA repair and recombination proteins [BR:
gpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GII33_13555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
GIY-YIG
DEDDh_C
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
QHN26825
LinkDB
All DBs
Position
3105987..3107759
Genome browser
AA seq
590 aa
AA seq
DB search
MSQGRTNVRTVHQQLSFADLDDPDSFFGADGQVRPDDEDLSLFEATLVVVDLETTGGSPV
DDRITEIGAVKIRGGEVVGEFATLVDPGMPIPPHIVSLTGITEAMVHDAPCESEALLSFL
EFARGAVLVAHNARFDIGFLRRGTERLQVPWTFPAPLCTVTLARRILSRDEAPSVRLSAL
AELFDVTVRPTHRALDDARATVEVLHRLLERVGNQGVRTIGQLTAYRSQTATRLAAKRHL
ADALPTRPGVYLFRGPADEVLYVGTAVNLRRRVLSYFAGTDPRRRIDEMVRLAVRVDHVE
CAHGLEAGVRELRLLAAHAPAYNRRSTQPRRGWWLVLSDDRFPRLTVRRAPTDDAVGPFS
DRSVAAAVADLISAGAGLRTCTALRRGATHHWCRTDSSGRMIGGCRAASPAPLTPTDYAA
RVMRARAVMFGESDDIVTAAVAEVTRLAAAEMFESAARQRDRTAAMIHTLALCQRLRALC
VVGELVVARPHECGGWELSVIRHGRLAGAGVARRGVPPMPVVQALVAAAETVAPDPGPLC
GAPPEEAGLIYRWITDPGARIVSATDAIALPAFGAARSLHWARLARQARR
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagggccgaactaatgtacgaacggtgcaccagcagctgagcttcgccgatctc
gacgacccggattcgttcttcggcgccgacggccaggtgcgcccggacgacgaggatctg
tccctgttcgaggccacgctcgtggtggtcgacctggagaccaccggcggcagcccggtc
gacgaccggatcaccgagatcggcgcggtgaaaatccggggcggcgaggtggtcggcgag
ttcgcgaccctcgtcgatcccggtatgccgatcccaccgcacatcgtctcgctcaccggg
atcaccgaggcgatggtgcatgatgcgccgtgcgagagcgaggcactgctgtcgttcctg
gagtttgcccgcggcgccgtcctcgtcgcccacaacgcccggttcgacataggcttcctg
cgccggggcaccgagcggttgcaggttccatggacatttcccgcacccctgtgcacggtc
acgctggcccgccgcatcctgagccgggacgaggccccgtcggtgcgcctgtcggcactg
gccgagctgttcgacgtgacggtgcgaccgacccaccgtgcgctcgacgacgcccgcgcg
accgtggaggtgttgcaccggctcctggagcgggtcggcaatcagggggtgcgcacgatc
gggcaactcaccgcctaccgctcgcagaccgcgacccgtctggccgccaaacggcatctg
gccgacgccctgcccacccgtcccggtgtctacctgttccgcggccccgccgatgaggtg
ctgtacgtggggaccgcggtcaacctgcgccgccgcgtgctgtcgtacttcgccggaacc
gacccccggcgccggatcgacgagatggtgcggctggccgtgcgtgtcgaccacgtggag
tgcgcgcacggactggaggccggggtgcgtgagctgcggctgctcgccgcccacgcaccg
gcctacaaccgacgttcgacgcagccgcggcgcggctggtggctggtgctgtcggacgac
cgcttcccacggctcacggtgcgccgcgcgcctaccgacgacgcggtcggtccgttctcc
gacagatccgtggccgccgccgtcgcggatctgatctcggcgggtgcgggcctgcggacc
tgcaccgcgctgcgtcgcggcgccacccaccactggtgccgcaccgactcgtcgggacgg
atgatcggcggctgccgggccgcctcaccggcaccgctgacgccgaccgactacgccgct
cgcgtcatgcgggcgcgcgcggtgatgttcggcgagagcgacgacatcgtgaccgcggcc
gtggcggaggtgacgcggctggcggcggccgagatgttcgagtcggcggccaggcagcgg
gaccgcacggctgcgatgatccatacgctggccctgtgtcagcgactgcgcgcgctgtgc
gtggtgggagagctcgtcgtcgccagaccacacgagtgcggtggctgggagctgagcgtg
atccggcacggccggctggccggcgcgggcgtggcccgtcgtggggtacccccgatgccg
gtggtgcaggcgctggtggcggcggcggagaccgtggcacccgatcccggcccgttgtgc
ggcgcaccgccggaggaggcgggactgatctatcgatggatcaccgatccgggtgcccgg
atcgtgtccgcgaccgacgccatcgcacttccggcgttcggcgccgcgcgcagcctccac
tgggcgcgactggcccgacaggcccggcgatga
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