Gordonia pseudamarae: GII33_16530
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Entry
GII33_16530 CDS
T07482
Name
(GenBank) AAA family ATPase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gpd
Gordonia pseudamarae
Pathway
gpd03420
Nucleotide excision repair
gpd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GII33_16530
03430 Mismatch repair
GII33_16530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpd03400
]
GII33_16530
Enzymes [BR:
gpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GII33_16530
DNA repair and recombination proteins [BR:
gpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GII33_16530
MMR (mismatch excision repair)
Other MMR factors
GII33_16530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
HRDC
UvrD_C_2
AAA_30
Viral_helicase1
HHH
Motif
Other DBs
NCBI-ProteinID:
QHN27315
LinkDB
All DBs
Position
complement(3734726..3736879)
Genome browser
AA seq
717 aa
AA seq
DB search
MSRSPGERVCEDAVVGPCDSGVVPDILDGLDPEQRAAVLAPRGPVCVLAGAGTGKTRTIT
RRIAHLTTSGQVNPGQVLAVTFTARAAGEMRGRLRSLEVGGVQAQTFHAAALRQLRYFWP
QAFGGLRWELLDNKFQMVSRAAHRVGLPTSKEAVRDLAAEIEWAKASLIGPARYVEDVAE
LGRDTPQPAERVAAVFAAYERLKVDENGDRLFDFDDLLIYTTEILRTDRAIAEEFRERYR
CFVVDEYQDVTPVQQGLLAEWLGARDDLTVVGDANQTIYSFTGATPSYLLDFTRRFPDAT
LVRLERDYRSTPQVVDLANRVIGQARGRIAGTRLRLLGQRSAGPEPVFAEYPDEPAEAAA
VALKVADLIEQGVPASEIAILYRINAQSDNHEQALTEAGIPYQVRGGESFFARTEVRQAM
RGLTEAAHRDDLPADADVPMVTRAVLAPLGLSPDEPSGAQARARWESLRAVAALVDDLAV
AQPDLTLRSVVAELNARAQSRHPPTVQGVTLSSLHAAKGLEWDAVFLVGLTDGSLPISQA
INSGFEAIEEERRLFYVGVTRAREHLRVSWALARNEGGRARRRSRFVTDDIVPDTSPASR
IAEPAPVRRGPSCRICGTRLVGSAAALLGRCERCPADIDENLLAELRQWRDEVADAKKVP
GFTVLSEKLLTSIAEQAPATPQELIKIHGIGQKKLTDYGDDIVAIVVRTRSSGRLPG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggtcacccggcgaacgggtgtgcgaagacgctgtcgtagggccctgcgatagt
ggtgtcgtgcccgacatcctcgatggtctcgatcccgagcagcgtgccgccgtcctcgct
ccgcgcggaccggtgtgcgtgctggcgggtgcgggcaccggcaagacccggaccatcacc
cggcgcattgcgcatctcaccacatcggggcaggtcaatcccggccaggtgctcgcggtc
acgttcaccgcgcgggcggccggggagatgcgcgggcgcctgcgctcgctcgaggtgggc
ggagtacaggcgcagacctttcacgccgcggcgttgcgtcaactgcgctacttctggccg
caggcgttcggtgggctgcgctgggaattgctcgacaacaagttccagatggtctcgcgg
gccgcgcaccgggtgggtctgcccacctcgaaggaggcggtccgcgacctcgccgccgag
atcgaatgggccaaggcatcgctgatcggtccggcgcgctatgtcgaggacgtcgccgaa
ctgggccgtgacacaccgcaaccggccgagcgtgtcgccgccgtgtttgccgcgtacgaa
cggctgaaggtcgacgagaacggtgatcggctcttcgatttcgacgatctgctgatctac
accaccgagattctgcggaccgaccgggcgatcgccgaggagttccgcgaacgttatcgt
tgcttcgtcgtcgacgaataccaggacgtcacccccgtgcagcagggcctgctcgctgaa
tggctgggtgcccgggacgatctgacggtggtgggggatgccaaccagaccatctattcg
ttcaccggtgccaccccgtcgtacctgctcgacttcacccgtcgattccccgatgccacc
ctggtgcggctggaacgcgactaccgttcgacaccgcaggtggtcgacctcgccaaccgg
gtgatcgggcaggcgcgcggccggatcgccggtacgcggctgcggctgctgggtcagcgg
tcggccgggcccgagccggtgttcgccgagtatccggacgagcctgccgaggcggccgcc
gtggcgctgaaggtggccgacctgatcgagcagggggtgccggcgtcggagatcgcgatt
ttgtaccggatcaacgcgcagtcggacaatcacgaacaggcgctcaccgaggccggtatc
ccgtatcaggtgcgcggcggcgaatcgttcttcgcccgcaccgaggtgcggcaggcgatg
cgcgggctgaccgaggccgcgcatcgcgacgatctgcccgccgacgccgatgtgccgatg
gtgacccgtgccgtgctggccccgctggggctgtctccggatgaaccgtcgggcgcgcag
gcgcgggcccgctgggagtcgctgcgggcggtcgcggccctcgtcgacgatcttgccgtt
gcccagcccgatctgacgctgcgctcggtggtggccgaactgaacgcccgagcgcagtcc
cggcaccctcccaccgtgcagggcgtcacgttgtcgtcgctgcacgcggccaagggcctg
gaatgggatgcggtgttcctggtcggtctgaccgacggttcgttgccgatctcgcaggcc
atcaattccggtttcgaggcgatcgaggaggagcgccggctgttctacgtcggtgtgacc
cgcgcccgggaacatctgcgggtgtcgtgggcgctggcccgcaacgagggcggccgggcc
cggcgccgttcgcgcttcgtcaccgacgacatcgtgcccgacacgtcaccggcctcccgg
atcgccgaaccggcgccggtacgccgcggcccgtcgtgccggatctgcggcacccgtctc
gtcgggtcggcggccgcgctgctcggccgctgtgaacgctgcccggccgacatcgacgag
aatctgctcgccgaactgaggcagtggcgcgacgaggtcgccgacgccaagaaggtgccc
ggtttcaccgttctgagcgagaagctgctcacctcgatcgccgaacaggccccggccacc
ccccaggagttgatcaagatccacggcatcggccagaagaagctcaccgactacggcgac
gacatcgtcgcgatcgtcgtgagaacgcggtcatccggtcgtctgcccggctag
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