Gordonia pseudamarae: GII33_18215
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Entry
GII33_18215 CDS
T07482
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gpd
Gordonia pseudamarae
Pathway
gpd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gpd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GII33_18215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gpd03021
]
GII33_18215
03400 DNA repair and recombination proteins [BR:
gpd03400
]
GII33_18215
Enzymes [BR:
gpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GII33_18215
Transcription machinery [BR:
gpd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GII33_18215
DNA repair and recombination proteins [BR:
gpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GII33_18215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
MAD
DUF3450
Sey1_3HB
Motif
Other DBs
NCBI-ProteinID:
QHN27616
LinkDB
All DBs
Position
complement(4215192..4219148)
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDVNFFDELKIGLATADDIHNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTKAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDDELRHAELSTREAEIEVEKKALADQRDVDLNERQQKLEQD
LAELEAEGAKADVRRKVKDGAEREMRRLRDSVQRQIDELVEIWDKFTKLSTGELIIDEKL
YRQLDERFGEYFTGAMGAEAIKKLLEIFDIDAEAELLRETIRSGKGQKKLRALKRLKVVA
AFQQSGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNQAQNIKSAKRMVERQR
PAVWDVLEEVINEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFYLTTLKDGAVGSYR
EATTDGAEEGVYSSPAEAQMAVDRGALTVQSRIKVRLTDQRPPADVEHEVFPDGWRYGQP
WTTITTLGRVLFNELLPIEYPFVDEQMPKKRQAAIINDLAERYPMIVVAQTVDKLKDVGF
YWATRSGVTVSMADVLVPPQKAEILERYEERADGLERKFQRGALTPDERRDALVEIWKQA
TEEVGKVMEEYYPEDNPIIMIPKSGATGNLTQVRNLSGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGILVAL
GEKQPDGSIIRDAHVETSAYARTLAADATDADGNVVVERGHDLGDPAIEALLAAGITEVK
VRSVLTCGTGTGVCAHCYGRSMATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHQGGVG
DDITGGLPRVQELFEARVPKGVAPIAEVSGRVRLEDDDRFYKITITPDDGSEEVVYDKIS
KRQRLRVFKHEDGSERLLSDGDHVMVGQQLMEGSANPHEVLRVMGPRQVQIHLVNEVQEV
YRSQGVSIHDKHIETIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAANRKQVTEGGEPA
AGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINSRSDKLIGLKENVIIGKLIPAG
TGINKYRNIQVQPTEEARAAAYAVPSYDDTYYSPDGTFGAPSGAAVPLDDYGFSNDYR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaactttttcgacgaactgaagatcggcctggccacggccgacgacatc
cacaactggtcgtacggtgaggtcaagaagccggaaacgatcaactaccgcacgctcaag
ccggagaaggacggtctgttctgcgagaagatcttcggaccgacgcgcgactgggagtgc
tactgcggtaagtacaagcgcgtccggttcaagggcatcatctgcgagcggtgcggcgtc
gaggtcaccaaggccaaggtgcgccgtgagcggatgggccacatcgagctggccgcaccg
gtcacccacatctggtacttcaagggtgtgccgagccggctgggctacctgctcgacctg
gcgccgaaggatctggaaaagatcatctacttcgccgcctacgtgatcacctccgtcgac
gacgagctgcgtcatgcggagctctcgacccgtgaggccgagatcgaggtcgagaagaag
gccctggccgatcagcgcgacgtcgacctgaacgagcgccagcagaagctggagcaggat
ctggccgaacttgaggccgagggcgccaaggccgatgtgcgccgcaaggtcaaggacggc
gccgagcgcgagatgcgtcgtctgcgcgattcggtccagcgccagatcgacgagctggtg
gagatctgggacaagttcaccaagctgagcaccggcgaactcatcatcgacgagaagctg
taccggcagctcgacgagcgtttcggtgagtacttcaccggcgcgatgggtgccgaggcg
atcaagaagctcctggagatcttcgacatcgacgccgaggcggagttgctgcgcgagacc
atccgcagcggcaagggccagaagaagctgcgcgcgctcaagcgcctcaaggtcgttgcc
gccttccagcagtcgggtaactcgccgctgggcatggtgctcgacgcggtgccggtgatc
ccgccggagctgcgtccgatggtgcagctcgacggtggccgtttcgccacctccgacctg
aacgatctgtaccgccgggtcatcaaccgcaacaaccgcctcaagcgactgatcgatctg
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtggacgcg
ctgttcgacaacggccgtcgcggccgtccggtgaccggtccgggcaaccgcccgctcaag
tcgctgagcgatctgctcaagggcaagcagggccggttccgccagaacctgctcggtaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggcgctggagctgttcaagccgttcgtgatgaagcgtctg
gtggacctgaaccaggcgcagaacatcaagtcggccaagcggatggtggagcgtcagcgt
cccgccgtgtgggatgtcctcgaagaggtcatcaacgagcatccggtgctgctcaaccgt
gcgcccacgctgcaccgcctcggtattcaggcgttcgagccgcagctcgtcgagggcaag
gccatccagctgcatccgctggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgagcgcggaggcgcaggccgaggcccgcatcctgatgctg
tcgtcgaacaacatcctctcgcccgcctcgggccgtccgctggccatgccgcgtctggac
atggtgaccggcctgttctacctcaccaccctcaaggacggtgctgtcggttcgtaccgg
gaggccaccaccgacggtgcggaggagggtgtctactcgagcccggccgaggcgcagatg
gccgtcgaccgcggtgcactcaccgtgcagtcgcggatcaaggtgcggctgaccgatcag
cgtccgccggccgacgtcgagcacgaggtgttccccgacggctggcgctacggtcagccg
tggaccaccatcaccaccctgggccgggtgctgttcaacgaactgctgccgatcgagtac
ccgttcgtcgatgagcagatgccgaagaagcgtcaggccgcgatcatcaacgatctcgcc
gagcgctacccgatgatcgtcgtcgcgcagaccgtcgacaagctcaaggacgtgggcttc
tactgggccacccgttcgggtgtgacggtgtcgatggccgacgtgctggtgccgccgcag
aaggcggagatcctcgaacgctacgaggagcgggccgacggcctggagcgcaagttccag
cgtggcgcgctgactccggacgagcgtcgtgatgcgctggtggagatctggaagcaggcc
accgaagaggtcggcaaggtcatggaggagtactaccccgaggacaacccgatcatcatg
atcccgaagtcgggtgccaccggtaacctgacgcaggttcgtaacctgtcgggcatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcgccccatcaagtcgtcgttccgc
gagggcctgacggtgctggagtacttcatcaacacccacggtgcccgtaaggggctggcc
gacaccgcgctgcgcaccgccgactcgggttacttgacccgtcgtctggtggacgtctcg
caggatgtcatcgtccgtgagaccgactgcggcaccgaacgcggcattctcgtcgcgctc
ggcgagaagcagcccgacggttcgatcatccgcgacgcgcatgtggagacctccgcgtac
gcccgcaccctggcggccgacgcgaccgacgccgacggcaacgtcgtcgtggagcgtgga
cacgatctgggcgatccggcgatcgaggcactgctggccgccggtatcaccgaggtcaag
gtgcgttcggtgctcacctgcggcaccggcaccggtgtgtgcgcacattgctacggacgg
tcgatggccaccggcaagctcgtcgacatcggcgaggccgtcggtatcatcgccgcccag
tcgatcggtgagcccggcacgcagctgacgatgcgtaccttccatcagggtggtgtcggt
gacgacatcaccggcggtctgccgcgtgtccaggagctgttcgaggcgcgcgtacccaag
ggcgtcgccccgatcgccgaggtctcgggccgggttcgcctggaggacgacgaccgcttc
tacaagatcaccatcaccccggacgacggttcggaagaggttgtctacgacaagatctcg
aagcgtcagcggttgcgcgtgttcaagcacgaggacggctccgagcgtctgctgtccgac
ggcgatcacgtgatggtcggccagcagctcatggagggctcggccaacccgcacgaggtg
ctgcgcgtgatgggcccgcgccaggtacagatccacctggtcaacgaggtccaggaggtg
taccggagccagggtgtgtcgatccacgacaagcacatcgagacgatcgtgcggcagatg
ctgcgccgggtcaccatcatcgattcgggttcgacggagttcctgcccggttcgctcacc
gagcgcgccgagttcgaggccgccaaccgcaagcaggtcaccgagggcggcgagcccgct
gcgggccgtccggtgctgatgggtatcaccaaggcatcgctggcgaccgactcgtggctg
tcggcggcgtcgttccaggagaccacccgcgtgctcaccgatgcggctatcaacagccgc
agcgacaagctgatcggtctcaaggagaacgtgatcatcggtaagctgatcccggccggt
accggtatcaacaagtaccgcaacatccaggtgcagccgaccgaggaggcgcgtgccgcc
gcgtacgcggtgccgtcctacgacgacacctactacagcccggacggcaccttcggtgcc
ccgtccggtgccgcggttccgctggacgactacggtttctccaacgactaccggtag
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