Gemmatimonas phototrophica: GEMMAAP_04330
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Entry
GEMMAAP_04330 CDS
T04580
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
gph
Gemmatimonas phototrophica
Pathway
gph02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gph00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GEMMAAP_04330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gph03021
]
GEMMAAP_04330
Transcription machinery [BR:
gph03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GEMMAAP_04330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_2
Sigma70_r4_2
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
AMW06550
UniProt:
A0A143BPX3
LinkDB
All DBs
Position
1056552..1057394
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AA seq
280 aa
AA seq
DB search
MAPSEPERDILDQYLYEVSTYPLLKAAEEIELAKKIRAGDQDALQELVKRNLRFVISVAK
KYQNRGLPLIDLIGEGNVGLLTAARKFDPDQGVKFISYAVWWIRQAILSSLARQGRTVRV
PLNRTADLSRIIKASEILRQKLRREPSPEELAQVTGLSVDVVQSLAALNTGDVRLDAPMD
PDGDRSLIERFVADEMPDTEEEAMNRFLTDEIEQALSTLPPRDAKVLRLYFGLEGGREHT
LEEIGSMLGVTRERVRQLRDRALKRLREGDVGRALSSFAA
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atcgcgcccagcgaaccggaacgcgacatcctcgaccagtacctctacgaagtctcgacc
tatccgctgctcaaggccgcggaagaaatcgagctcgccaagaagatccgtgctggtgac
caggatgcgctccaggaactggtgaagcgcaaccttcgcttcgtcatttccgtcgccaag
aagtaccagaaccgcggcctgccgctcatcgacctgattggcgaaggcaacgtggggctg
ctcaccgcggcgcggaagttcgatcctgaccagggcgtcaagttcatctcgtacgccgtg
tggtggatccgtcaggccattctgtcgtcgctggcgcgccagggacgcacggttcgcgtg
ccgctcaaccgcaccgccgacctctcgcgtatcatcaaggcctcggaaatcctgcgccag
aagctgcgccgtgagccgtcgcccgaagagctcgcgcaggtcaccggcctgtccgtagac
gtcgtgcagtcgctcgccgccctcaacaccggcgacgtgcgcctcgatgcgccgatggat
cccgatggcgatcgctcgctcatcgaacggttcgtggccgacgaaatgcccgacaccgaa
gaggaagccatgaaccgcttcctcaccgacgaaatcgagcaggcgctctccacgcttccc
ccgcgtgacgccaaggtgctccgcctctacttcggcctcgaaggcggacgcgagcacacc
ctcgaggaaatcggctccatgctgggcgtgacccgcgagcgtgtgcgccagcttcgcgac
cgggcgctcaagcgcctccgcgaaggcgatgtcggacgcgcgctgagcagcttcgcggcg
taa
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