Gemmatimonas phototrophica: GEMMAAP_04525
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Entry
GEMMAAP_04525 CDS
T04580
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gph
Gemmatimonas phototrophica
Pathway
gph03420
Nucleotide excision repair
gph03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GEMMAAP_04525
03430 Mismatch repair
GEMMAAP_04525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gph03400
]
GEMMAAP_04525
Enzymes [BR:
gph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GEMMAAP_04525
DNA repair and recombination proteins [BR:
gph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GEMMAAP_04525
MMR (mismatch excision repair)
Other MMR factors
GEMMAAP_04525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
AMW06551
UniProt:
A0A143BQ11
LinkDB
All DBs
Position
complement(1113425..1115488)
Genome browser
AA seq
687 aa
AA seq
DB search
MVPPAPSPDGPALNAAQAAAASHGDSPLLVVAGAGSGKTRTLIHRVAALIHRGVPPGRIL
LLTFTRRASQEMLSRCERLVGSDSQHVQGGTFHGIAHRLLRKFGPAAGLPADFTILDQSD
AGDLMGLARAALGYGDLKNAPRGAPRFPRAETLVSIYSRHVNTSQEVANILGEQWPHFIS
WAGDIERCFADYVKRKSERNLLDYDDLLLSWALLLEQAPPIAEQIRALYDHVLVDEYQDT
NPLQSRILRGLCTNGNITVVGDDAQSIYAFRGATIRNILDFPHQFPGTRIVTLEQNYRST
APILETTNTIISRSTERYSKRLWTERDGGEAPWLVTVRDEAAQTAFVVDRILELHEQGTP
LREMAVLFRAGFLSADLEIELANRRIPYEKWGGLKFLEAAHIKDMLAFLRVLENPRDEVS
WYRILRLLPGVGDATARAAVDMLMAHHWEPMAIGGVRAAARSRPALLAVSALFDGMRRVE
KQDRPHSPGESIRLVRQLYDPILKGTYDDAPPRLADLDQLEIIAAGYADRTSFLAALALE
PPAATQDLAVGSTDEDDALILSTVHSSKGKEWDAVFVIHAADGIFPMARAASDEAQVEEE
RRLLYVAMTRARNELYVTYPLQSYATRMGADFAFSQLTRFLDQGVRQTMQRVTLGDANPP
HQALPGPREGAVIEPIVDLRALLRGKF
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
attgttcctccggcgccctcccccgacggcccggccctcaatgccgctcaggccgccgcc
gccagccatggggactcgccgctcctcgtcgtcgccggcgccgggtcggggaaaacgcgg
acccttattcaccgggtggccgccctcattcaccgcggtgtgccccccggccgcatcctg
ctgctcaccttcacccgtcgcgcctcgcaggaaatgctcagccggtgcgaacggctggtc
ggctccgattcccagcatgtccagggcggcaccttccacggcattgcccaccgcctgctg
cgaaaattcggccccgctgccggccttccggccgacttcaccattctcgaccagtcggac
gccggcgacctcatggggctggcccgcgccgccctcggctacggggacctcaaaaacgcg
ccccgtggcgcgccccgcttcccgcgcgcggaaacgctcgtctccatctactcccgccac
gtcaacacgtcgcaggaggtggccaacatcctcggcgaacagtggccgcacttcatcagt
tgggcgggcgacatcgagcgctgctttgccgactatgtgaagcgcaagagcgaacgcaac
ctgctggactacgacgacctgctgctgtcgtgggccctgctgttggagcaggcgccgccc
attgccgagcagatccgggcgctctacgaccatgtgctggtggacgagtaccaggacacc
aatccgctgcagtcccgcattctccgggggctctgcaccaacggcaacatcacggtggtg
ggtgacgacgcgcaaagcatctacgcgtttcgtggcgccaccattcgaaacatcctcgat
ttcccgcaccagtttcccggcacgcgcatcgtgacgctggagcagaactaccgctccacg
gcgcccattctcgagaccaccaacaccatcatctcccggagtaccgagcgctattccaag
cgcctctggaccgagcgcgatggcggcgaagcgccgtggctggtcacggtgcgcgatgag
gcggcgcagacggccttcgtggtagaccgcatcttggagttgcacgaacagggcacgccc
ctgcgcgaaatggccgtactctttcgtgccggcttcctcagcgccgacctggaaatcgaa
ctggccaatcgccgcattccgtacgaaaagtggggcgggctcaagttcctcgaggccgcg
catatcaaggacatgctggcgttcctgcgggtgctggaaaatccgcgggacgaggtgagc
tggtatcgcattctgcgcctgcttcccggtgttggggacgccacggcccgcgccgcggtg
gacatgctcatggcccaccattgggagcccatggccattggcggcgtgcgggccgccgcc
cgctcccgtccggcgttgctcgcggtatcggcgctctttgacgggatgcgacgggtcgaa
aagcaggatcgtccgcacagcccgggagaaagcattcgcctggtgcggcagctgtacgac
cccattctcaaggggacctacgacgacgcgccgccgcgactggccgacctcgaccaactc
gagattatcgccgccggctacgccgaccgcacgtcctttcttgccgccctggccctcgaa
ccgccagccgccacgcaggatctggccgtgggcagcaccgacgaagacgacgcacttatt
ctttccacggtgcactcctccaaaggcaaagagtgggacgcggtgttcgtcattcatgcc
gccgacggcattttccccatggcccgcgccgccagcgacgaagcgcaggtggaggaagag
cggcggctgctgtacgtggccatgacgcgcgcccgcaacgagctctatgtgacctacccg
ttgcagagctacgccacccgcatgggcgccgactttgccttttcgcagctcacgcgcttt
ctcgaccagggcgtgcggcagacgatgcaacgcgtcacccttggcgatgcaaatcccccg
catcaggcactgccgggcccgcgcgagggggctgtcatcgagccaattgtggatttgcgg
gcgctgctacgcggcaaattctga
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