Gemmatimonas phototrophica: GEMMAAP_05635
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Entry
GEMMAAP_05635 CDS
T04580
Name
(GenBank) helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gph
Gemmatimonas phototrophica
Pathway
gph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GEMMAAP_05635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gph03019
]
GEMMAAP_05635
03400 DNA repair and recombination proteins [BR:
gph03400
]
GEMMAAP_05635
Enzymes [BR:
gph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GEMMAAP_05635
Messenger RNA biogenesis [BR:
gph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GEMMAAP_05635
DNA repair and recombination proteins [BR:
gph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GEMMAAP_05635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
AMW04462
UniProt:
A0A143BIT6
LinkDB
All DBs
Position
complement(1377183..1378748)
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AA seq
521 aa
AA seq
DB search
MTVTSPAHRTPEDILREVFGYDAFRPGQRLVIDAVLEGRDCIALMPTGAGKSLTYQLPAR
LLGGTVLVISPLISLMKDQVDAVAGLGFKVAAINSTLDPEERRTRLDAFRAGAYELVYLA
PEALDGYLGDFVQGCPISLLVVDEAHCISQWGHDFRPSYRRLQGLKQQLDVPVLALTATA
TREVARDILRQLGMKKPAGFKGSFFRPNLRIGVRKKGQGGNTRNEILALIRSHAGESGIV
YCQSRKGVEQTTEFLVSQGVRALSYHAGLSAEERASNQDAFQRDDVDVVVATVAFGMGID
KSNVRFVIHRDMPKDIESWYQEIGRAGRDGLPSDCVMFYSWADVMQHERFLDRLEDEALR
TRTRAATVALFNLVERASCRHQALVRHFDEAIDNCGTSCDQCTGQSVATRLAEAADLERV
AVAGWRKSTPGVRLPSRAALDVNELDADDRELFDALRAMRRELADEAGVPAYIVFGDRVL
LEMVERKPDSHAALLQVPGVGQAKLERYGDAFLEVLAMYST
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
gtgactgtcacttcgcccgcccatcgcacacccgaggacatcctgcgcgaggtcttcggg
tacgatgcgttccgccctgggcagcgtctggtgattgacgccgtgcttgagggacgggac
tgtattgcactgatgcccaccggcgcgggcaagtcgctcacgtaccagttgccggcgcgg
ctgctgggcggcaccgtgctggtgatctcaccgctcatttcgctgatgaaggaccaggtg
gatgccgtggccggtctgggcttcaaggtggcggccatcaattccaccctcgaccccgag
gagcggcgcactcgactcgacgccttccgggccggcgcgtatgagctggtgtacctcgcc
ccggaagccctcgacggctacctcggcgattttgtgcaggggtgccccatttccctgctg
gtggtggacgaagcccactgcatcagtcagtgggggcacgatttccgtccatcgtaccgg
cgactgcaggggctgaagcagcagctcgatgtgcccgtgcttgccctgaccgctacggcc
acgcgcgaggtggcgcgtgacattctgcgccagctgggcatgaaaaaaccggccggattc
aaggggtcgttcttccgtcccaatctgcgcatcggcgtacgcaagaaggggcaaggggga
aacacccgcaacgaaatccttgcgctgattcgctcacatgcgggcgagagtggcattgtg
tattgccagagtcgcaaaggcgtggagcagaccacggaatttctggtgtcgcagggtgtc
cgtgcgctgtcgtatcacgccggtctgagcgccgaggagcgcgccagcaatcaggacgcc
ttccagcgtgacgatgtggacgtggtggtggcgacggtcgcctttggcatggggatcgac
aaatccaatgtgcgcttcgtcattcaccgcgacatgcccaaggatatcgagtcgtggtat
caggaaatcgggcgtgccggacgtgatgggctgccaagcgactgcgtcatgttttattcg
tgggccgacgtcatgcagcacgagcggtttctcgaccgacttgaggacgaggcgttgcgg
acccgcacgcgtgccgccacggtggcgctgttcaatctggtggagcgggcttcctgtcgt
catcaggcgctggtgaggcattttgacgaagccatcgacaactgtggcacatcgtgcgat
cagtgcaccggtcaatcggtggccacgcggttggcggaggcggcggaccttgagcgcgta
gccgtggcggggtggcgcaagtccacgccgggggttcgactgccatcacgcgcggcgctg
gacgtcaacgaactcgacgccgacgaccgcgagctctttgatgccctgcgggccatgcgt
cgggaattggccgatgaggcgggcgtgccggcctacatcgtttttggtgaccgcgtgctg
ctggagatggtggagcgaaaaccggacagccatgcggcactcctgcaggtccccggggtc
ggccaggccaaactcgagcgctacggcgacgcgtttctggaagtcctcgccatgtactcg
acgtag
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