Gemmatimonas phototrophica: GEMMAAP_10145
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Entry
GEMMAAP_10145 CDS
T04580
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
gph
Gemmatimonas phototrophica
Pathway
gph03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GEMMAAP_10145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gph03400
]
GEMMAAP_10145
DNA repair and recombination proteins [BR:
gph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GEMMAAP_10145
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GEMMAAP_10145
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_33
AAA
AAA_22
UB2H
NACHT
DUF1131
Motif
Other DBs
NCBI-ProteinID:
AMW05087
UniProt:
A0A143BJ61
LinkDB
All DBs
Position
complement(2412120..2414219)
Genome browser
AA seq
699 aa
AA seq
DB search
MSSLYRLHSPFSPAGDQPRAIAELKSGLHRGDRIQTLLGVTGSGKTMTIANVIEEWGRPT
LVLSHNKTLAAQLYGELKSFFPNNAVEYFISYYDYYQPEAYVPSSDTYIEKDASINEDID
RLRLRATSSLMEREDVVIVSTVSAIYGLGDPVSYRERMVSLARGQQIPRDDILRALVGIQ
YLRNDVAFDRGTFRVRGDTVEIYPAYEEQAVRLELWGDEIERISKIDPVTGDTIATLERM
AIYPAKHFITNRPTIERASKAIRDELAERLAELRMAGKLLEAQRLEQRTNFDLEMLAEIG
TCAGIENYSRHISGRQSGERPACLLDYFPDDFLVVVDESHVTLPQVRAMYNGDRARKLTL
VDYGFRLPSALDNRPLVFDEFMQLVPRLINVSATPGELELQLSEGVVVEQVIRPTGLLDP
VLEVRPVKGQVDDLLHEIHVRERKGERVLVTTLTKRMSEDLTDYLQQMGVRVRYMHSDID
AIERMEIVRGLRLGEFDVLVGINLLREGLDMPEVSLVAILDADQEGFLRSDRSLIQTIGR
AARNLHGRAILYADRITGSMQRAMDETDRRRTIQHEHNVAHGIVPTGVSKSVDEVRFITR
VADARVEREGEAPAPKRLKSESTARSRPELEQLVGELEVAMREAATALDFEAAARLRDQL
FEVRTALGEKPAQARGNTAAPKRPPGSAPMRRAGGKRGR
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgagctcattgtatcgcctgcattcgccattttcgcccgccggcgatcagccgcgcgcc
attgcggaactcaaatccgggctgcatcgcggcgatcggatccagacgttgctcggcgtc
acgggctccggcaagaccatgacgattgccaacgtcattgaggaatgggggcggcccacg
ctcgtgctgtcgcacaacaagacgttggcggcgcagttgtacggggaactgaaatcgttc
tttccgaacaatgcggtcgagtacttcatctcgtactacgactactatcagcccgaagcc
tacgtcccctcaagcgatacatacatcgagaaggacgccagcatcaacgaagacattgat
cggctgcgcttgcgggcaacgtcgtcgctgatggaacgagaagatgtggtgatcgtgtcc
acggtatcggccatctatggcctgggtgatccggtatcctatcgcgagcgcatggtgtcg
ttggcgcgcgggcaacagatcccgcgcgacgatattctgcgcgctctggtcggcattcaa
tatctgcgtaatgatgtcgccttcgatcgcggcacgtttcgcgtgcgtggcgataccgtg
gagatctatccggcctacgaggaacaggcggtacggctggagctgtggggcgacgaaatc
gagcgcatttccaagatcgatccggtcactggagatacaatagccacgctggagcgcatg
gcgatctatccggcgaagcacttcattaccaatcgtcccacgattgagcgggcgtcaaag
gccattcgcgacgaattggcggagcgcctggccgagctgcggatggctgggaagttgctc
gaggcacagcgactggagcagcgcaccaatttcgatctggagatgttggcggaaatcggg
acctgtgctggcatcgaaaattattcgcggcacatcagcgggcgacagtcgggcgaacgt
ccggcgtgtttgctggattatttcccggatgattttctggtcgtggtggacgaatcgcac
gtcacgctgccgcaggtgcgtgcgatgtacaatggcgaccgggcgcgcaagctcacgctg
gttgactacgggttccgtttgccgagtgccttggacaatcgaccgctggtgttcgatgag
ttcatgcaactcgtgccgcggctcatcaatgtgtccgccaccccgggggagctggagttg
cagctgtctgagggggtcgtggtagaacaggtcatccgtcctacgggacttctcgatccg
gtgctcgaggtccgaccggtgaaggggcaggtggatgatctgctgcacgagattcacgtg
cgcgagcggaagggtgaacgggtgctggtcaccacgctgaccaagcgcatgtcggaggat
ctcacggactacctgcagcagatgggcgttcgggtgcgctacatgcattcggacatcgat
gccattgagcgcatggagatcgtccgtggtcttcgcctcggcgagttcgatgtgttggtg
gggatcaatctgttgcgcgaaggactcgatatgccggaggtctccctggtagccatcctt
gatgccgatcaggaaggatttttgcgcagtgatcgctcgctcatccagaccattgggcgc
gcggcgcgcaatttgcacggcagagcgattctctatgccgatcgcattaccggctccatg
cagcgcgccatggatgaaaccgatcgtcggcgtaccattcagcatgagcacaacgtggcg
cacggcattgtgccgaccggggtcagcaagagcgtggacgaagtgcgattcattacgcgc
gtggccgatgctcgtgtggaacgtgaaggggaggcgccggcgcccaagcgcttgaagagc
gagagcaccgcgcgttcccgccccgaactggagcagttggttggggagttggaagtggcc
atgcgggaggccgcgacggcattggactttgaggcggcggcacgattgcgcgatcagctg
tttgaggtgcgcaccgcgctgggggagaagccggcgcaagcgcgtggcaatacggcggcg
cccaagcgaccgccaggcagtgcgcccatgcgtcgggcgggaggaaagcgtgggcgctga
DBGET
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