Gemmatimonas phototrophica: GEMMAAP_12280
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Entry
GEMMAAP_12280 CDS
T04580
Name
(GenBank) hypothetical protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gph
Gemmatimonas phototrophica
Pathway
gph03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GEMMAAP_12280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gph03400
]
GEMMAAP_12280
Enzymes [BR:
gph01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
GEMMAAP_12280
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
GEMMAAP_12280
DNA repair and recombination proteins [BR:
gph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GEMMAAP_12280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
DUF1631
Motif
Other DBs
NCBI-ProteinID:
AMW05368
UniProt:
A0A143BK19
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All DBs
Position
2925647..2926501
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AA seq
284 aa
AA seq
DB search
MPELPETETIARDLHGMVVGAVIAGVVVPRPDVLRDADQEGFARALIGQPIRRVWRRAKL
IVLDVDARPTLASLEPSWRVVVQPRFTGGLVVDDGTLSAPDRAYVCVTLLLTDGRALHYR
DVRRLGTVALMDAARFAEYSGALGPEPLDHTLDDAAFSGCVRESRQAIKIALMDQKRLAG
VGNIYANEALWRAGIDPSREACTLTPTELSRLRVELQAVLTASIAARGTSFRDYRDARGE
RGAFVEQLAVYGRAGEPCRRCGRRLVGTHAVDGRSTVFCAGCQF
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacttcccgagacagaaaccattgcgcgcgacctgcatggcatggtcgtcggt
gcggtgattgctggcgttgtggtccctcgccccgatgtgttgcgggacgctgaccaggag
gggtttgcccgggcgcttatcggccagcccatccgtcgagtgtggcgccgcgccaaactg
attgtcctcgacgtggacgcgcgtccaacgttggcttcgttggagccatcatggcgtgtg
gtggtgcaacctcgcttcaccggcggactcgtggtggacgacggcacactgagcgcgccg
gatcgcgcgtatgtctgtgtcacgctgttgctcaccgatggtcgggccctgcactaccgc
gacgtgcgccggctggggacagtggcgctcatggatgcggcgcgatttgcggagtattcg
ggggcccttggccccgagcctcttgaccacaccctcgacgatgctgcattttcgggatgt
gttcgggagtcgcgccaagccatcaagattgccctgatggaccagaagcgactcgcgggc
gtgggcaacatctacgcgaacgaggcactatggcgcgctggcatcgatccatcccgggaa
gcatgcaccctcacccccaccgagctgtcgcggttgcgggtcgaactgcaggcggtgctg
acggccagcatcgcggctcgcggcaccagctttcgcgactaccgggacgcccgcggtgag
cggggcgccttcgttgaacagctggccgtctacggccgcgccggtgaaccctgccggcgc
tgtggacggcggctggtcggcacccatgccgtggacggacgcagcacggtcttctgcgcg
gggtgtcagttctga
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