Gemmatimonas phototrophica: GEMMAAP_14530
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Entry
GEMMAAP_14530 CDS
T04580
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gph
Gemmatimonas phototrophica
Pathway
gph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GEMMAAP_14530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gph03019
]
GEMMAAP_14530
Enzymes [BR:
gph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GEMMAAP_14530
Messenger RNA biogenesis [BR:
gph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GEMMAAP_14530
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
P-loop_SecA
Sacchrp_dh_NADP
Cas3-like_C_2
Flavi_DEAD
HEM4
Motif
Other DBs
NCBI-ProteinID:
AMW05690
UniProt:
A0A143BMH2
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All DBs
Position
complement(3450463..3451623)
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AA seq
386 aa
AA seq
DB search
MTVIDPDTLVGDVTFADLGLAQPLLNALRDAGYERPTPIQREAIPLALMGRDLIGLAQTG
TGKTASFTLPMVHRLIGGPRRTRVLVLTPTRELCLQVEESVRKYSSHAPVNVIPVFGGVG
YEPQEKALRQGVDVVVATPGRLLDHLEKRNVDFTYLETLVLDEADRMLDMGFAPQLNRIV
EQIPRYRQTLLFSATMPPEVEALARKYLRKPVVVQVGRRSSAAITVTHAVYPVPRHRKND
LLVHLLTKDSHDSVLVFTRTKSGADRVVRDLEKAGVRAGAMHADKSQRERMAALEDFKNG
TLRVLVATDIAQRGLDISGITHVINYDVPQQPEDYVHRIGRTGRAASTGDAYTFMSAEDI
GMVRTIERTIGQEIPRVSVPGFDFGT
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgacagtcatcgatcctgatacgctcgtcggcgacgtaacattcgccgacctggggctg
gcccagcccctgctcaatgccctgcgcgacgccggctacgaacgtcccacacccatccag
cgcgaagcgatcccgcttgcgctcatggggcgtgacctcatcggtctggcccagacgggt
accggcaaaacggccagctttacgctgcccatggtgcaccgcctcattggcggaccgcgc
cgtacccgcgtgttggtgctgacgcccacccgcgaactgtgccttcaagtggaagaaagc
gtgcggaagtactccagccatgccccggtcaacgtgatcccggtgtttggtggtgtgggg
tacgagccgcaggaaaaggcgctgcggcaaggggtggacgtggtcgtggccacgccaggc
cgtctgctcgaccatctcgagaagcgcaacgtggactttacctacctcgagacgttggtg
ctcgacgaggcggaccgcatgctcgacatgggtttcgcgccgcagctgaaccggattgtg
gagcagattccccgctatcgtcagacgctgcttttttcggccaccatgcctcctgaagtg
gaagcgctggcccgcaagtatctgcgcaagccggtggtggtgcaggtgggccggcgctcg
agtgcggccatcacggtcacgcacgcggtgtacccggtgccccgtcaccgcaagaacgac
ctgctggtgcatctgctcaccaaggactcccacgactcggtgctggtgttcacgcgcacg
aagagcggcgcagaccgggtggtgcgtgatctcgagaaggcgggtgtgcgggccggggcc
atgcatgcggacaagtcacagcgcgagcgcatggcggcactggaagacttcaagaacggc
acgctccgggtgctcgtggccaccgatattgcgcagcgcgggctcgacatcagtggcatc
acgcacgtgatcaactacgacgtgccgcaacagccggaagactacgtgcaccgaattggc
cggaccggtcgggccgccagcacgggcgacgcgtacacgttcatgagcgccgaagatatc
ggcatggtgcgcacgattgagcgcaccattgggcaggagattccacgtgtgagcgtgccg
gggttcgatttcgggacctga
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