Gemmatimonas phototrophica: GEMMAAP_16305
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Entry
GEMMAAP_16305 CDS
T04580
Name
(GenBank) hypothetical protein
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
gph
Gemmatimonas phototrophica
Pathway
gph03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GEMMAAP_16305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gph03400
]
GEMMAAP_16305
Enzymes [BR:
gph01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GEMMAAP_16305
DNA repair and recombination proteins [BR:
gph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GEMMAAP_16305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
RecD_N
AAA_11
AAA_22
Helicase_RecD
UvrD-helicase
SLFN-g3_helicase
PhoH
AAA_16
AAA_24
PIF1
SH3_13
UvrD_C
nSTAND3
AAA_28
ATPase
AAA_18
Mg_chelatase
AAA_5
NTPase_1
SRP54
AAA_33
AAA_25
DEAD
NPHP3_N
KTI12
NACHT
Zeta_toxin
AAA_17
AAA
Motif
Other DBs
NCBI-ProteinID:
AMW05935
UniProt:
A0A143BMY6
LinkDB
All DBs
Position
complement(3875028..3876872)
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AA seq
614 aa
AA seq
DB search
MSQTVNDSLSVHQVPDISTLDRAFGRYVARGVPDNVAALVAHSAVLVSAERAQGNSCVEL
LAYTGRPIPDDPSGAMFPEVTAWCSALLASGRCAAVGQQETAALDVTPLVLHGTRLYLRR
FFEAERRVATAIRNRLAAPLTVELSRSAPLFRKLFPEASHGVDWQAVAAVAALRSSLVFV
TGGPGTGKTTVAARLLALLLNRAPTLFIAVAAPTGRAAARLTEAIGAAVQREQLEELVGT
QLPTVGNTLHRLLGYTPWNEQFRYHRGNPLPYDVLIVDEASMVDVLMMDTLFAATRPAAR
IIVLGDPDQLASVDTGFVLGDVTRAARAAGGAFPEAHSQALSADYGTLSGGSGVLPDAQP
IAAPLRDAVVRLRVSYRFGRRPGIGALATATQDGNAQEVLRVLQDAAYEDVALDAPSPID
GVLAPLMPQVHAYLDATSPQEALAAQARFRVLCALRDGDTGVSGVNDAMERWLRQRGFSV
TGWYHHRPILVTANDPALRLFNGDVGTTWVEEGVPLVYFPIAGGGVRAVPPSRLPAHETA
WAMTVHKAQGSEFDHVRLILPEADTRILTRELLYTGITRARERVSIVGTQEMVRAATQRS
VARSSGLVEQLNGP
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgagccagacagtcaatgactcactgtcggtacaccaggtgccggacatctcgaccctc
gatcgtgcgtttggtcgttatgtcgcccgtggggtgccggacaatgtggccgctctcgtg
gcgcatagcgcggtgctggtgagtgcggagcgtgcgcaggggaacagttgcgtcgaactg
ctcgcgtataccgggcgtcccattcccgatgacccgtcgggggcaatgttcccggaggtc
acggcctggtgcagcgcactgctcgccagtggccgctgtgccgctgttggacagcaggag
accgcggcgctcgatgtcaccccactcgtgctccacggcacacggctctatctgcgtcgg
ttctttgaggccgagcgtcgggtggccacggccattcgaaatcgcctcgccgcaccactt
acggtggagctgtcgcgttcagcgcccctctttcgaaagctgtttccggaggcatcgcac
ggcgtggactggcaggccgtggctgcggtggcggcgctgcggtcatcgctggtgtttgtt
accggcgggccgggcacgggaaaaacaaccgtggccgcgcggttgctcgcgctgttgctg
aatcgtgccccaacattgttcattgccgtggcggcacccaccggtcgcgcggccgcgcgc
ctgacggaggccattggcgcggcggtgcagcgtgagcagctggaggaactggtcggcacg
caactgcccacggtcgggaacacgttgcatcgattgctggggtataccccgtggaacgag
cagtttcgatatcatcgcggcaacccgttgccctatgatgtgttgattgtggatgaagcc
agtatggtggacgtgctcatgatggatacgctctttgcggccacccgtcctgccgcgcgc
atcattgttctgggcgatcccgatcagctggccagcgtggataccgggttcgtgctgggc
gatgtgacacgtgcggcccgcgcagcgggtggagcatttccggaggcgcattcgcaggcg
ctgtcggccgactatggcacattgagcggcggaagtggtgtcttgcccgacgcgcaaccg
atcgcggcgccgctgcgggacgcggtggtgcgactgcgcgtgtcctaccgcttcggccgt
cggcctggcattggcgcgctcgccaccgcaacgcaggacggcaatgcgcaggaagtactg
cgcgtgctccaggatgcggcgtacgaggatgtcgcgttggatgcgccatcacccatcgac
ggcgtactggcgccgttgatgccgcaggtgcacgcgtaccttgacgcgacctccccgcag
gaggcgctggccgcgcaggcacgcttccgtgtgctatgcgcgctgcgcgacggcgacacc
ggggtgtcgggcgtgaacgacgccatggagcgctggctgcggcagcgtggtttctccgtg
acgggatggtatcatcaccgccccatcctcgtgacggcgaacgatccggccttgcggctc
ttcaatggcgatgtcggaacgacatgggtcgaagagggcgtcccgcttgtgtacttcccg
attgccggaggcggtgtgcgcgcggtaccgccatcgcggttgccagctcacgaaacggcc
tgggccatgacggtccacaaggcgcagggctcggagtttgatcatgtccgcctgatactg
ccggaggcagacacccggatactcacgcgggagttgttgtataccggcatcacacgcgcc
cgcgagcgcgtgagcattgtgggcacacaggagatggtgagggcggcgacccagcggagc
gttgcgcggtcgtcagggctggtggagcaactgaatgggccgtaa
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