Gemmatimonas phototrophica: GEMMAAP_18100
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Entry
GEMMAAP_18100 CDS
T04580
Name
(GenBank) heavy metal transporter
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gph
Gemmatimonas phototrophica
Pathway
gph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GEMMAAP_18100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gph03019
]
GEMMAAP_18100
03009 Ribosome biogenesis [BR:
gph03009
]
GEMMAAP_18100
Enzymes [BR:
gph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GEMMAAP_18100
Messenger RNA biogenesis [BR:
gph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GEMMAAP_18100
Ribosome biogenesis [BR:
gph03009
]
Prokaryotic type
rRNA helicases
GEMMAAP_18100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
WSD
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AMW06997
UniProt:
A0A143BPI4
LinkDB
All DBs
Position
complement(4316529..4318316)
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AA seq
595 aa
AA seq
DB search
MQDSTEAGNNGFAALGVDSRIAEALSALGYEEPTPVQRAAIPPLLVGRDVLAQAATGTGK
TAAFALPLLTRIGAGHKAANGAPSVLILVPTRELAMQVAEAVHRYGKPLGLHALAVYGGA
SMELQIRALKRGVDVVIATPGRALDHIKRNTLKLGTLQAVVLDEADEMLDMGFADELEAI
LDATPASKQTCLFSATLPPRIAGIARKYLRDAEHVTVEREVLAEGAVARVRQVAYVVSRA
HKMPALARVLDIEQPTSAIVFCRTRTEVDELTETLSARGLRAESLHGGLSQDQRDRVMQK
FRAKKVDLLIATDVAARGLDVKHVSHVVNFDVPADAETYVHRIGRTGRAGREGVAITLAE
PREHRLLRNIERQTSQKIDIAQVPTVADLRAHRQELVKMTLREAIVEGGLESFRGMVEAL
ADEFDVMDVAAAAVKLVAARDGGEDEIPAVTPREPRERFDRGESRGGESRGGESRGGDSR
GGERFARDERGGGDRRPPRAEAGGAKGKKPRRETAWTPATLWIGAGRKLKMRPGDLVGAI
ANEAGLDSEHIGAIQIADNFSTVDVPEAMADEVITALKNTKIKGLRVQVRRDRMK
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
ttgcaggatagtacagaagctggcaacaatggcttcgccgcactgggtgttgactcgcgc
attgccgaggcgctttcggcgcttggctacgaagaacctacgcccgtgcagcgggcagca
attccgcccctgctggtcggccgcgatgtgctcgcgcaggcggccacaggcaccggcaag
acggccgcctttgcgctcccgttacttacccgcattggcgccggccacaaggctgccaac
ggggccccgtcggtcctcattctggtccccacccgcgaactggccatgcaggtggccgaa
gcggtgcaccgttatggcaagccgctgggcttgcatgcgctggccgtttacggcggcgcg
agcatggaactgcagatccgcgccctcaagcggggtgtggatgtcgtgatcgcgacccct
ggtcgcgcgctcgaccacatcaagcgcaacacgctcaagctgggcacgttgcaggcggtg
gtgctcgacgaagccgacgaaatgctcgacatgggcttcgccgacgaactcgaggccatt
ctcgacgccacgccggccagcaagcagacctgtctgttttcggccacgttgccgccgcgt
attgccgggattgcgcgcaagtatctgcgcgacgccgagcatgtcacggtggagcgggaa
gtgttggccgagggcgccgtggcccgggtacgccaggtggcgtacgtggtgagccgcgcg
cacaagatgccggcgttggcgcgggtgctcgacatcgagcagcccaccagcgcgattgtc
ttctgccgcacgcgcacggaagtggacgagctcaccgagacgctctcggcgcgcgggttg
cgagcggagtcgttgcacggcgggctgtcgcaggaccagcgtgaccgcgtgatgcagaag
ttccgcgccaagaaggtggatctgctcattgccaccgacgtggcagcgcgcgggctcgat
gtgaagcacgtgagccacgtggtgaacttcgatgtgcccgcggatgccgaaacgtatgtg
caccgcattggccgtaccggccgtgccggtcgcgagggtgtggccattacgttggccgag
ccgcgtgagcaccggttgctgcgcaacattgagcggcagaccagccagaagatcgacatc
gcgcaggtgcccaccgtggccgacctgcgggcgcaccgtcaggagctggtgaagatgacg
ttgcgcgaagccattgttgagggaggcttggagagcttccgcggcatggtggaagcgttg
gcggatgagtttgacgtgatggacgtggcggcggcggcggtgaagctcgtcgcggcgcgt
gacggtggtgaggacgagattccggcggtgacgccgcgtgagccgcgcgagcggtttgat
cgtggggagagccgtggtggcgagtcgcgcggcggggagtcgcgtggtggcgatagccgc
ggcggcgagcggtttgcgcgtgacgagcgtggcgggggcgatcgtcgtccgccgcgtgcc
gaggctggcggtgcgaagggcaagaagccgcgccgcgagaccgcctggacgccggccacg
ttgtggattggcgccggtcgcaaactcaagatgcgtccgggcgacttggtgggggccatt
gccaacgaggccggcttggactcggagcacattggcgccattcagattgccgacaacttc
agcacggtggatgtgccggaggcgatggcggacgaagtgatcaccgcgctcaagaacacc
aagatcaaggggctgcgcgtgcaggtccgtcgggaccgcatgaagtag
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