Geobacter pickeringii: GPICK_03300
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Entry
GPICK_03300 CDS
T03568
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gpi
Geobacter pickeringii
Pathway
gpi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gpi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GPICK_03300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gpi03021
]
GPICK_03300
03400 DNA repair and recombination proteins [BR:
gpi03400
]
GPICK_03300
Enzymes [BR:
gpi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GPICK_03300
Transcription machinery [BR:
gpi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GPICK_03300
DNA repair and recombination proteins [BR:
gpi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GPICK_03300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
ArnB_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AJE02527
UniProt:
A0A0B5B7I4
LinkDB
All DBs
Position
734865..739031
Genome browser
AA seq
1388 aa
AA seq
DB search
MEDFFNFYDKPKDPLHFSSIRISVSSPEKIRERSFGEVKKPETINYRTFKPERDGLFCAK
IFGPTKDYECNCGKYKRMKHRGIVCEKCGVEVIPSKVRRERLGHIDLATPVAHIWFLKSL
PSRIGNLLDISLKDLEKVLYFEAYAVTDPKDTGMTACEVLSEDRYLKAMEEYGGQFEAGM
GAAAIRDCLKGLDLDQLAEQLRQEMVEATSEAKRKKTAKRLKVVEAFKESGNRPEWMILE
CIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELQAPEVIIRNEKRMLQ
EAVDALFDNGRRGRAIAGPNKRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPE
LRLHQCGLPKKMALELFKPFIYNKLEEKGYVTTIKSAKKMVEKERPEVWDVLEEVIKEHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLSIESQVEA
RVLMMSTNNILSPAHGKPIIVPSQDMVLGIYYMTRERHFAKGEGKIFSSPEEVRIAYDAG
EVDLQARITVRIKNLVSDEKPELVDATTGRVLLRDILPDAVPFSAINKVMSKKELSNLVD
VCYRLAGNKETVILADRLKETGFRYSTLAGISICMNDMVIPEGKAAIIDRATEEVKEIQN
QYTEGLITDGERYNKVIDIWAKSTEEIAREMLDNLSKDTVNSPDGKEVKVPSFNAIHMMA
DSGARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLNVLQYFISTHGARKGLADT
ALKTANSGYLTRRLVDVAQDAIITEDDCGTLDGLTVSSLTEGGEVIEHIGDRILGRVTLD
DVLDPVTGEVLVPTNTEIDENLVKKIEDAGLERVKIRSVLTCQSRRGICAKCYGRDLARG
HLVNLGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASRHAEQTSLEARTEGRIKFININSV
VNVDGHHIVMNRNGELAIVDETGREREKYAVVYGAKIKIGPDQPVKPGETLAEWDPYTMP
ILTEVSGRIKFGDIVEGVTMEEQLDEVTGLSRKVIVESRDADKRPRIAIKDESGKTIKIG
ESSMGRYYLPVGANISVQEDSFVNAGDVIAKIPRETTKTKDITGGLPRVAELFEARKPKD
FAVISEIDGVVTFGKDAKGKRKVVVTPEIGEPKEYLIPKGKHISVHENDYVRAGEPLMDG
SSNPHDILRVLGLKELAKYLVDEVQEVYRLQGVKINDKHIETIVRQMLRRVRIKDVGDTS
FLIDDQLERWAFEEENDKVLAKGGRPAIAEPLLLGITKASLSTESFISAASFQETTKVLT
QAAIEGKVDSLRGLKENVIMGRLIPAGTGLSRYRNLKLVVDQSEVVVPASPPPVEIEEYP
EIDDDGDE
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
ttggaagattttttcaacttttacgataaacccaaggatccgctccacttttcatccatc
cgcatctccgtctcctcgccggagaagattcgcgaacgttcgttcggcgaggtgaaaaag
cccgagacaatcaactatcgcacctttaagcccgagcgcgatggtctgttctgtgccaag
atctttggccccaccaaggattacgagtgcaactgcggaaaatacaaacggatgaagcac
cgcggcatcgtctgtgaaaagtgcggcgtcgaggtgattccgtccaaggtccgtcgcgaa
cggcttggtcatatcgaccttgccaccccggtggcccatatctggtttctaaagtcgctc
ccttcgcgcattggtaacctcctcgacatttcactgaaggatttggagaaggttctctat
tttgaggcctatgccgtgaccgatccgaaagataccggcatgacggcttgtgaagtgctt
tccgaggaccgctacctgaaggcgatggaggagtacggcggccaattcgaggcgggcatg
ggggcagccgccatccgcgactgcctcaagggacttgatctcgaccaactggctgagcag
cttcgccaggaaatggtggaggccacaagcgaggcgaagcgcaagaagaccgccaagcga
ctcaaggttgtagaggcgttcaaggagtcgggtaaccgtccggaatggatgatccttgaa
tgcatcccggttcttcccccggagctccgtccgcttgttcccctcgacggcgggcgcttt
gccacctctgacttgaacgatctctaccgccgggtcataaaccgtaacaaccgcctcaag
cggctcatggagctccaggctcccgaggtcatcatccgcaacgagaagcggatgctccag
gaggccgtcgacgcgctctttgacaacggtcgtcgtggtcgtgccatcgccggccccaac
aagcgcccgctcaagtcgctttccgacatgctgaaaggcaagtcaggacgcttccgtcag
aacctgctcggtaagcgggttgactactccgggcgttcggttatcgtcgtcggtcccgaa
ctccggctccaccagtgcggtcttcccaaaaagatggcgctggaactcttcaaaccgttc
atttacaacaagctcgaggaaaagggctacgtaaccaccatcaagagtgcaaaaaagatg
gtggagaaagagcgccccgaggtgtgggatgttctcgaagaggtgatcaaggaacacccg
gtactcttgaaccgagccccgacccttcaccgcctcggtatccaggccttcgagccggtc
ctaatcgaggggaaggcaatccagctgcatcccctggtctgtactgcattcaacgcggac
ttcgacggtgaccagatggcagttcacctcccgctctccattgaaagccaggtcgaggcg
cgggtgctcatgatgagtaccaacaacatcctttcaccggcccacggcaagccgattatt
gtcccgtcccaggacatggttctcggcatttactacatgacacgcgagcgtcacttcgcc
aaaggggaggggaagattttctcctcacccgaggaagtgcggattgcctatgatgccggt
gaggtcgaccttcaggcccggataaccgtccgcatcaagaacctggtgtctgatgagaag
ccggagttggtcgatgccacgaccggacgtgtcctccttcgcgacattttgccggatgcg
gtgccgttctcggcaatcaacaaggtgatgagcaagaaggagctttcgaacctcgtcgac
gtctgctaccgccttgccggaaacaaggagaccgtcattctggccgaccgtctcaaggag
accggtttccgctattcgacgcttgccggcatttcgatctgcatgaacgacatggtcatc
ccagaagggaaagcggccatcatcgatagggctaccgaggaggtcaaggagatccagaat
cagtacaccgagggtctcatcaccgacggagagcgctacaacaaggttatcgacatctgg
gcaaaatcgacggaagaaattgcccgcgagatgcttgacaacctgtcgaaggatacggtt
aattcccctgacgggaaagaggtgaaggtcccctccttcaacgcaattcacatgatggcc
gattctggagcccggggctctgcccagcagattcgccagctggcagggatgcggggcctc
atggccaagccgtccggggagatcatcgagaccccgatcaccgcgaacttccgggaaggt
cttaacgttcttcagtacttcatctctacccacggtgcccggaagggccttgccgatacc
gcgctcaagaccgccaactccggatatcttactcgccggctcgtcgatgtcgcgcaggac
gccatcatcactgaggacgactgcgggacccttgatgggctcacggtgtcttctctcacc
gagggaggtgaggtgatcgagcatatcggtgaccgcatccttggccgtgtaaccctcgac
gatgtccttgatcctgttaccggtgaggttctggttcctaccaatactgaaatcgacgaa
aatctcgtcaagaaaattgaggatgcgggtctcgagcgggtcaagatccgttcagttctt
acctgtcagagccggcgtggcatctgtgccaagtgttacggtcgcgacctggcacgaggg
catctggtcaatctcggcgaggctgtcggtgttattgcagcacagtccattggagagccg
ggtacccagctcaccatgcggacgttccacatcggtggtacggcctcccggcacgccgag
cagacttcgctcgaagcgcgaaccgagggtcgcatcaagtttatcaatatcaatagcgtt
gtgaatgttgatggtcatcacattgtcatgaaccgcaacggtgagctggctattgtggac
gaaacgggacgcgagcgggagaagtatgccgtagtctatggcgccaagatcaagattggt
cccgatcagccggtcaagccgggagaaacgcttgccgaatgggatccgtacaccatgccg
attctcaccgaggtgtcgggccgtatcaagttcggcgacatcgttgaaggtgtaacgatg
gaggagcagcttgacgaggtcacgggtctgtcccgtaaggtcatcgtcgagtcgcgggac
gccgacaaaaggccgcggatcgccattaaagatgagtctggcaagacgattaagatcggc
gaaagttcaatgggacggtattacctccctgtgggcgccaacatctccgttcaggaggac
tcgttcgtcaacgccggtgacgtcatcgcgaaaattccgcgcgagacgaccaagacgaag
gacatcaccggcggtcttccgcgggttgcagaactcttcgaggcccgcaagccgaaggac
ttcgccgttatctccgagattgacggtgtggtgacctttggaaaggacgcgaaagggaag
cgcaaggtggttgtgacccctgagatcggcgaaccgaaggaatatctcattcccaaaggc
aagcatatcagtgtgcatgaaaacgattacgtccgtgcgggagagccgctcatggatgga
tcgtcgaaccctcatgatattctgcgggtcctggggctgaaggagcttgccaagtatctc
gtggacgaggtccaggaggtgtatcgtcttcagggtgtcaagatcaatgacaagcatata
gaaactattgtccgccagatgctgcgtcgcgtacggatcaaggatgtgggagacaccagc
ttcctgatagatgatcagcttgagcgttgggcgtttgaggaggagaatgataaagtgctg
gccaagggggggcgtccggctattgccgagccgttgcttcttggcatcacgaaagcatcg
ctctcgacggagtctttcatctcggcggcttcattccaggagacgacaaaagtgttgaca
caggcagccatcgagggtaaggtggacagccttcgcggcctgaaggaaaatgtcattatg
ggccgtctcatccctgctgggactgggctttcgcggtaccggaatctgaagctcgtcgta
gaccagtccgaagtggtggttcccgcttccccgcctccggtcgagattgaagaatacccc
gagatagatgatgacggtgatgagtag
DBGET
integrated database retrieval system
