Geobacter pickeringii: GPICK_04455
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Entry
GPICK_04455 CDS
T03568
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gpi
Geobacter pickeringii
Pathway
gpi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GPICK_04455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpi03019
]
GPICK_04455
Enzymes [BR:
gpi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GPICK_04455
Messenger RNA biogenesis [BR:
gpi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GPICK_04455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
UvrD-helicase
AAA_22
Flavi_DEAD
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
AJE02717
UniProt:
A0A0B5B838
LinkDB
All DBs
Position
972413..973747
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AA seq
444 aa
AA seq
DB search
MEFTAFNLHPQIAAGVQEAGYTSPTPIQAQAIPPVMAGRDVMGLAQTGTGKTAAFALPIL
HRLMTGERGRVRALVVAPTRELAEQIHQSIQTLGHKSRLRSVTVYGGVGVNPQVQKLKAG
AEIVVACPGRLLDHINQGTIDLSHLEVLVLDEADQMFDMGFLPDIRRILKHLPAKRQTLL
FSATMPPDIRTLAHDILRDPVTVQVGNVAPAVTVTHALYPVEQHLKTPLLLELLHHTDTE
SVLVFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAA
RGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTMVTRDDAAMVRTIERTLNA
TLERRTMDGFDYSVPAPKKDTEFARPPRQPMPGRKPAGAGKGDSPAGPKGAKDAARHRHQ
PGHGARSAGGPAGPRGRQSRRTGN
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggaattcactgcattcaatctccatccccagatcgctgccggcgtccaggaagcaggc
tacacctcccccacgccgatccaggcccaggccattccgccggtcatggcgggacgcgat
gtcatgggcctggcccagaccggcaccggcaagaccgcggcctttgccctgccgatcctg
caccggctcatgacgggagaacgggggcgcgtccgtgccctcgtcgtcgccccgacccgc
gagctggcggagcagatccaccagagcatccagaccctcggccataagagccgcctgcgg
agcgtcacggtctatggcggcgtcggggtcaatccccaggtgcagaagctgaaggccggc
gccgagatcgtcgtcgcctgccccggccggcttctcgaccacatcaaccaggggaccatc
gacctctcgcacctggaggtgctcgtcctggacgaggccgaccagatgttcgacatgggg
tttctccccgacatccggcgaatcctgaagcacctgccggcaaagcggcagacgctcctc
ttctcggccaccatgccgccggacatccggaccctcgcccacgacatcctgcgggatccg
gtgacggtccaggttggaaacgtggcgccggcggtcaccgtcacccacgccctctacccc
gtggagcagcacctgaagacgccgctgctcctggagctgcttcaccataccgacaccgag
tcggtgctcgtcttcacccgcaccaagcaccgggccaagcgcctcggcgaacagctggag
aaggcgggataccgggcggcgtcactccaggggaacctttcgcagaaccggcgccaggcg
gcactggacggtttccgcgacggcaccttccagatcctggtcgctaccgacatcgccgcc
cgcggcatcgatgtctcccaggtgtcccacgtcatcaactacgacatccccgacacggcc
gaggcctatatccaccgtatcggccgcaccggtcgggcggcccgcagcggtgacgccttc
accatggtgacgcgggatgatgccgccatggtccgcaccatcgagcggaccctcaacgca
acgctggagcgccgcaccatggacggtttcgattacagcgttcccgcaccgaagaaggac
accgagtttgcccgcccgccccgccagccgatgccgggccgcaaaccggccggagcaggg
aagggtgattccccggcaggcccgaaaggcgcaaaggatgccgcgcgacaccggcatcag
cccggccacggggcacgttccgcgggagggcccgcggggcctcgcggcagacaatcgcga
cggacgggcaattga
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