Geobacter pickeringii: GPICK_07885
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Entry
GPICK_07885 CDS
T03568
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gpi
Geobacter pickeringii
Pathway
gpi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GPICK_07885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpi03019
]
GPICK_07885
03016 Transfer RNA biogenesis [BR:
gpi03016
]
GPICK_07885
Enzymes [BR:
gpi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GPICK_07885
Messenger RNA biogenesis [BR:
gpi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GPICK_07885
Transfer RNA biogenesis [BR:
gpi03016
]
Prokaryotic type
tRNA degradation factors
GPICK_07885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
Motif
Other DBs
NCBI-ProteinID:
AJE03280
UniProt:
A0A0B5BFH3
LinkDB
All DBs
Position
1769031..1771124
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AA seq
697 aa
AA seq
DB search
MKEQTVNVELGGRTITIATGKMAKQASGSVVVSCGDTMVLVTAVAAKSAREGQDFFPLTV
NYQEKAYAGGKIPGGFFKREGRPTENETLTCRFIDRPIRPLFPESFLNETQIMATVISAE
EDNDPGILAMIGASAALEVSDIPFLGPIAGVKVGRVAGQFVCNPTVEQQKMSDMEVVVAA
SRDAVIMVEGSAAEVSESDLLEAIFFGHASVQPIIEAQVQLRAKAGVPKREVVAKPVDEA
LKARAKELAHASIKEAVRIKSKQERHNRIDAVSADTLTALAGEFEGREGEIKAFLGDFEY
ELVREHILKDGERIDGRDTKTVRPITCEVSVLPRAHGAALFTRGETQALVAATLGTAGDE
QRIDSLFGESKKRFLLHYNFPPFSVGETSMRLAPGRREIGHGMLAERALERVLPKHEDFP
YTIRIVSDILESNGSSSMASVCGGALSMMDAGVPIKAPVAGIAMGLIKEGDDVAILSDIL
GDEDHLGDMDFKVAGTAEGVTAIQMDIKITGVTREIMGTALAQAKEGRIHILGKMAETLA
ASRSELSPHAPRITTIWVKTDKIRDVIGSGGKNVRGITEATGVSIDIEDTGRINIASTSK
EACDKAIKMIRDLTAEAEEGKLYMGTVKKVMDFGAFVEIFPGTDGLVHISELDTERVKNV
TDVLKEGDKVLVKCIGIDKQGKIKLSRKEALGAVLPE
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaacaaacagtaaatgtggaactgggtggaaggaccataaccatagccacgggt
aaaatggccaagcaggcaagcggttcagtggtcgtcagttgcggcgacaccatggtgctt
gtgacggctgtggcagccaagagcgcacgcgaaggacaggacttctttccgcttaccgtg
aattaccaggaaaaagcctatgccggggggaagattcccggcggatttttcaagcgtgaa
gggcgcccgaccgaaaacgaaactctcacctgccgcttcatcgatcgtcccatccgtccg
cttttccctgagagcttcctcaatgaaacccagatcatggccacggtcatatcggccgaa
gaagacaatgatcccggcattcttgcgatgatcggcgcttctgcagcgctggaagtatcc
gatattccgtttctcggtccgatcgccggcgtcaaggttggacgcgtcgccgggcagttt
gtctgcaatccgaccgttgaacagcagaaaatgagcgatatggaagtggtcgtggcggct
agccgcgacgccgtgatcatggttgaggggagcgctgcggaggtttccgaaagcgacctg
ctcgaagcgattttctttggccatgcatcggttcaaccgatcatcgaagctcaggtccag
cttcgcgccaaggctggtgtgcccaaacgcgaggttgtcgcaaagcccgtcgacgaggca
ctcaaggcacgtgcgaaggagcttgcccacgccagcatcaaggaagcggtccgcatcaag
tcaaaacaggagcggcataatcggattgatgcggtgtctgcagataccctgactgcactt
gccggagaatttgaaggacgcgaaggcgagatcaaggcgtttcttggtgacttcgagtat
gaacttgtccgcgagcatatcctcaaggatggagagcggatcgacggccgcgacacgaaa
actgtccgtccgattacgtgtgaggtcagcgttcttccgagagcccacggcgccgcgctc
tttacccgcggggaaacccaggcccttgttgccgccaccctcggcacggcaggtgacgag
cagcggatcgattctctgttcggcgagagcaagaagcgcttcctcctccactacaatttc
ccgccgttctccgttggcgaaacgagtatgcgccttgccccgggtcgccgtgaaatcggc
cacgggatgcttgccgagcgcgctttggagcgggtgcttccgaagcatgaagatttcccc
tacacgatccggatcgtttccgacattctggagagcaatggttcttcctctatggcgtcg
gtctgcggcggtgcgctttccatgatggacgccggggtgccgatcaaggctcccgttgcc
ggcattgccatggggctcatcaaggaaggcgatgacgttgccatcctttctgacatcctt
ggtgacgaagatcacctgggcgatatggacttcaaggtcgccggtaccgccgaaggggtg
accgcaatccagatggatatcaagattaccggtgttacccgtgagatcatggggactgcc
cttgctcaagcaaaggaaggtcgcatccatattctcgggaagatggccgaaaccctggct
gcttcgcggtctgaactctctccccatgctccccgcatcaccaccatctgggtcaagacc
gacaaaatccgcgacgtcatcggttccggcggcaagaatgtccggggaatcaccgaggcg
accggcgtttcgatcgacatcgaggatacggggcggatcaacattgccagcacgagcaag
gaagcctgcgacaaggcaatcaagatgatccgcgatctcaccgccgaagccgaagaaggg
aagctttacatgggcaccgtcaagaaagtcatggactttggtgctttcgtggagattttc
cccggtacggacggcctggtccatatctccgaactcgacacggaacgggtaaagaacgtc
accgatgtactcaaggaaggcgacaaggttctcgtcaagtgcatcggcatcgacaagcag
ggcaagataaagctctcccggaaagaggctttgggagccgttcttcccgaatag
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