Geobacter pickeringii: GPICK_12255
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Entry
GPICK_12255 CDS
T03568
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gpi
Geobacter pickeringii
Pathway
gpi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GPICK_12255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpi03019
]
GPICK_12255
03009 Ribosome biogenesis [BR:
gpi03009
]
GPICK_12255
Enzymes [BR:
gpi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GPICK_12255
Messenger RNA biogenesis [BR:
gpi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GPICK_12255
Ribosome biogenesis [BR:
gpi03009
]
Prokaryotic type
rRNA processing factors
GPICK_12255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AJE04027
UniProt:
A0A0B5BBX6
LinkDB
All DBs
Position
2718040..2720424
Genome browser
AA seq
794 aa
AA seq
DB search
MAKKMLINVMHPEEARVAIVEEGKLVDLDIEIAGSEQTRGNIYKGVVVRVEPGLQAAFVD
IGLKRLGFLQMGEIHPSFWQWRSDIPEEQRSRRPRIQEILRRGQELVVQVEKGERDMKGA
ALTSYLSLPGRYMVLMPGSDSAGISRKVESESDRKKLKEKVAEMEIPEGLGYIVRTEALG
KTKTELAKDLQYLIKLHDTIQEKAADTKGPALIYQESNLVIRTIRDYFTAEIDEVLVDSK
DVYKQARDFFKQTMPKFEKLVKMHQEKRPIFSRYQIEEQIDLIYEKKVPLKSGGSIVIEP
TEALVSIDVNSGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVLDFIDMRDKKH
IAAVEKTLKAALKSDKARVTVGRISQFGMLEMSRQRIRQTLDQASVLECPHCSGRGKVKS
VESMALSFLRKVHAAAAKGTVAEVQGGLPLEVAYYLLNRKRGELAQIESDYDIVVTVKGK
TSLLMNQVELELVKRERPLSAELAPEAAEPVERKERAPKEVAAGEEPAEAAEGKKKRRRS
RKKGGAEEPLETEAAAEAAEETVVEEPSEEHEAEETEAGAEPPAAEGARKKRKRRRRRGK
KPPVEGAESAAEGAEGVPAEEAVQPAPETEGTEEEAPAADEAKKKRRRRRRRGGKRGAEE
GMAATGEEAASEGPAAEIEPPVVPAVPEPAPEAVPATAKPKKPRASRAKKSVPAEEAAEP
AAAAPAAPPAEAPEVAAEPPAPKKRAPRKKKEVPAEEAVTAAPAEEPAPEGGETPKKKRA
PRKKKEPTPEEPSA
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaagatgctcatcaacgtgatgcatccggaagaggcccgcgtcgccatcgtc
gaagaaggcaagctggtcgatctggacatcgagatcgccgggagcgaacagacccgcggc
aacatctacaagggggtggtggtccgggtggaaccggggctccaggccgccttcgtcgac
atcggactcaagaggctcggcttcctccagatgggggagatccacccctccttctggcag
tggcgcagcgacatccccgaggagcagcgcagccgccggccgcgcattcaggagatcctc
cgccgggggcaggaactggtggtccaggtggaaaagggggaacgggacatgaagggggcg
gccctcacctcctacctgtcgctgccggggcggtacatggtgctcatgccagggagcgac
tccgccggcatctcccgcaaggtggagagcgagtccgaccggaagaagctgaaggagaag
gtggcggagatggagatccccgaggggctcggctacattgtccggaccgaggccctcggc
aagaccaagaccgagctcgccaaggacctccagtacctcatcaagctccacgacaccatc
caggagaaggccgccgacaccaaggggccggccctcatctaccaggaatcgaacctggtg
atccgcaccatccgcgactacttcaccgccgaaatcgacgaggtgctcgtcgacagcaag
gatgtctacaagcaggcccgggacttcttcaagcagacgatgcccaagttcgagaagctc
gtgaagatgcaccaggagaagcgccccatcttctcccgctaccagatcgaggagcagatc
gacctgatctacgaaaagaaggtgccgctgaagtccggcggctccatcgtcatcgagccg
acggaggcgctggtctccatcgacgtcaactccggcaagtccaccggcgagaagggggtg
gaggacaccgccttcaagaccaacctggaggccgccgaagaggcggcgcggcaactccgg
ctccgggacctgggcgggctcatcgtgctcgacttcatcgacatgcgggacaagaagcat
atcgcggcggtggagaagaccctcaaggcggccctcaagagcgacaaggcgcgggtcacc
gtgggacgcatctcccagttcgggatgctcgagatgtcgcgccagcggatccgccagacc
ctggatcaggccagcgtcctcgaatgcccccactgctccggccgggggaaggtgaaatcg
gtggagagcatggccctctccttcctgcgcaaggtccacgccgccgccgccaaggggacc
gtggccgaggtgcaggggggacttccgctggaggtggcctactacctcctcaaccgcaag
aggggcgaactggcccagatcgagagcgactacgacatcgtcgtcaccgtcaagggaaag
acctccctcctcatgaaccaggtggagctggagctggtcaagcgggagagaccgctttcg
gccgagctggccccggaagcggccgaacccgtcgagcggaaggagcgggcgccgaaggag
gtggccgcgggagaggagccggcggaagccgcggaagggaagaagaagcggcgccggagc
aggaagaaggggggcgccgaagagcccctggagacggaagcggccgcagaagccgccgag
gagaccgtcgtcgaagaaccgtccgaagagcacgaggcggaggagacggaggccggagcc
gagccccccgccgcggaaggagcccggaagaagcggaaacgccggcgtcggcgcggcaag
aagccaccggttgaaggtgccgagagtgctgccgaaggggcagaaggagtcccggccgag
gaagcggtccagcccgcacccgaaacggaagggaccgaagaggaggctcccgccgccgac
gaggcgaagaaaaaacgccggcggcgccgccggcgcggcggaaagcgaggcgccgaggag
gggatggcggccacgggcgaagaagcggcgagcgagggaccggcggcagagatcgagccc
cccgtcgttccggccgtcccggaacccgcccccgaggcggtcccggcgactgcaaagccg
aagaagccgcgggcgtcccgggcgaagaagagcgtacctgcagaagaagcggccgaaccg
gcggcagcggcgccggccgctccccccgccgaagcccccgaagtggcggcagaacccccc
gcgccgaagaagcgggcaccccggaagaagaaagaggtccccgccgaggaggcggtcacc
gcggcaccggcagaagagccggcgccggagggaggggaaacgccaaagaagaagcgggca
ccgcgcaagaagaaggaaccgacgccggaagagccgtcggcctga
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