Geobacter pickeringii: GPICK_15510
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Entry
GPICK_15510 CDS
T03568
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
gpi
Geobacter pickeringii
Brite
KEGG Orthology (KO) [BR:
gpi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gpi03016
]
GPICK_15510
Enzymes [BR:
gpi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
GPICK_15510
Transfer RNA biogenesis [BR:
gpi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GPICK_15510
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AJE04586
UniProt:
A0A0B5BKJ6
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All DBs
Position
complement(3410319..3411464)
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AA seq
381 aa
AA seq
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MPDTPVSPDIITSAEGVGRLAERLGGEPIVACDLEADSMHHYQEKVCLLQFAVPGYAAIV
DPLATPDLAPLAPLFADGSRRKVFHGADYDIRSLHRDFGIEVNNLFDTMIACQYLGEREF
GLAAALRKRFGVELDKQYQRADWSRRPLSAGMIEYAVKDTTLLIDLYRQLEGELRERGRL
PWVEEECVLLTGVRMTQRGDDPLFLRFKGASRLDRRTLAVLEEVLRFRDRRARQADVPPF
KILGTDTVRELAEKRPRSAAELVGITGITEKVAARHGEGILRSVEKGMTVPERNLPVFPR
EERRRLSGPEEQRLKALKGWREEEAARLGIDMGYLANNALLEQLAVAAPRSVGELAASGS
LREWQMREFGPGILAALAPRR
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
ttgcctgacacccctgtttcacccgatatcatcacctccgccgagggggtaggccgcctc
gccgaacgtctcgggggagagcccatcgtcgcctgcgacctggaggccgactccatgcac
cactaccaggagaaggtctgcctcctccagttcgcggtgccggggtatgccgccatcgtc
gaccccctcgccacccccgacctggcaccgctggcccccctcttcgccgatggctcacgg
cgcaaggtcttccacggcgccgattacgatatccggtcactgcaccgcgatttcggcatc
gaggtgaacaacctcttcgataccatgatcgcgtgccagtatctgggggaacgggaattc
gggctggcggcggcgctgcgcaagcgcttcggggtggagctcgacaagcagtaccagcgg
gccgactggagccgccgtcccctcagcgcggggatgatcgagtacgccgtgaaggatacg
acgctcctcatcgacctctatcgccagcttgagggtgagttgcgggagcggggacggctg
ccgtgggtggaggaggaatgtgtgcttctcaccggggtgcggatgacgcagcgcggcgac
gatccgctgtttcttcgtttcaaaggggcatcgcggctggaccgccggaccctggcggtg
ctggaggaggtccttcgcttccgtgaccggcgtgcccggcaggccgacgtcccgccgttc
aagatcctcggcaccgacacggtgcgggagctggccgagaagcgcccccggtcggcagcg
gagctcgtggggatcacggggattacggagaaggtggcggcgcgccacggcgaagggatt
ctgcggtcggtggagaaggggatgacggttccggagcggaacctgccggtctttccccgg
gaggagcgccggcggttgagcggccccgaggagcagcggctgaaggcgctgaaagggtgg
cgcgaggaggaggcggcccggctcgggatcgacatggggtacctggccaacaacgccctg
ctggagcagctggccgtcgccgccccccgctcggtcggggagcttgccgccagcggctct
ctgcgggagtggcagatgcgggaattcgggccggggatcctggcggccctcgctccccgc
cggtaa
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