Geobacter pickeringii: GPICK_16400
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Entry
GPICK_16400 CDS
T03568
Name
(GenBank) helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gpi
Geobacter pickeringii
Pathway
gpi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gpi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GPICK_16400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpi03400
]
GPICK_16400
Enzymes [BR:
gpi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GPICK_16400
DNA repair and recombination proteins [BR:
gpi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GPICK_16400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
UB2H
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AJE04742
UniProt:
A0A0B5BE38
LinkDB
All DBs
Position
3600206..3603679
Genome browser
AA seq
1157 aa
AA seq
DB search
MTRTDNALIRRIADLLIPDHARTELTGIKGSAPAYLLARLAAETTRPLLVVAADTDAATE
LVTELRFYRGQGDDILHFPPWDVSPFEKGSPHADVTAVRLATLRRLADRKAAAVVTTPAA
LRQRILPRALLDGASLYFLPGEESDREELLAKLVTLGYLPVPLVEDRGTFAVRGGIVDLF
PPGFEQPVRIEFFGDFVDTIRTFDPLTQRSLHPLEELLLLPSREMILSAEVLKGVAPRLK
GRCDELEISPVARRELMEQLQNGLYPAGAEWLLPLFHPHLETLFDYAGDAVRVLVDPAAI
ADEERRFDEELAAAVSRARDRGDLFPAPETLFLPAPEAAERLAGRLVTIPSLAVEETGKE
GETVPLDTQENTDLKVTLSPNGEGVLKPLVARLNGWLEERQRVIVVCHQRGQAQRLYELL
APYPLPLIISERGFPAERERDDGKVEVLVGDLSRGFRLPEGQLVVIAEEEIFGRRQKRRG
VSELRKKQIMTSLAELKPGDYMVHLDHGIGIYRGLQHIALSGCAGDFLLLEYAGGDKLYL
PVDRLNLVQRYVGAEGVEPRVDKLGGTSWEKTKGKARAAVQEMAGELLQLYAARQLHEGH
PFSPPDELYREFEASFAYEETSDQMAAITDVIADMTSRKPMDRLVCGDVGYGKTEVAMRG
AFKAVMDGKQVAVLVPTTVLAQQHLETFRARFGAYPVTIEMLSRFRTAKEQKEILEKVKK
GTIDVIIGTHRLLQSDVAFKDLGLLIVDEEQRFGVTHKEKLKKYKAVVDILTLTATPIPR
TLYMSMMGIRDLSIIDTPPVDRLAVKTFVARSSDDIIREAVMRELRRGGQVFFVHNRVQS
IMNWAEHLRRIVPEAKIAVGHGQMEEGELEKVMLGFMHGETNLLLCTTIIESGIDIPTAN
TLIVDRADTFGLAQLYQLRGRVGRSKQRAYAYLLIPGEGAISSDARERLKIIQELTELGA
GFRLATHDLEIRGAGDLLGAKQSGNIAAVGFDLYTELLEEAIQSLKGGERIERVEPEINL
RIPAFVPEDYVRETNQRLIIYKKLTQADSEEEVDEVMAELVDRFGTLPLAASYLLEVMKL
RIHFKRLLVRMAEFDGRRLSFTFHERTPVPPDTIIGLIRTSPKRYQFTPDFRLIAELADT
SFEGVIAEARNLLKTLG
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgactcgtaccgacaatgccctcatccgtcgcatcgccgaccttctgatcccggaccac
gcccgcacggagctcaccggaatcaaggggtcagcgccggcgtacctcctggcccggctc
gcggcggaaacgacccgcccgctcctcgtggtcgccgccgacaccgacgccgccaccgaa
ctcgtcaccgagctccgcttctaccggggccagggcgacgacatcctccacttccccccc
tgggacgtgagccccttcgagaagggatcgccccacgccgacgtaaccgccgtccgcctc
gccaccctccgccggctggcggaccgcaaggcggccgccgtggtgacgaccccggcggcg
ctccgccagcgcatccttccccgggcgctcctcgacggcgcctccctctacttcctcccc
ggcgaggagagcgaccgcgaggagctcctggcaaagctcgtgaccctgggctacctcccg
gtcccgctggtggaggaccgggggaccttcgccgtgcggggggggatcgtcgacctcttt
ccccccggcttcgagcaaccggtgcggatcgagttcttcggcgacttcgtcgacaccatc
cggaccttcgatcccctcacccagcgctcccttcaccccttggaggaactgctgctcctc
ccctcccgggagatgatcctgagcgccgaggtcctgaagggggtcgcccctcgcctcaag
gggcgctgcgacgagctggagatctcccccgtggcccgccgggagctcatggagcagctt
cagaacggcctctacccggcgggagcggaatggctcctccccctcttccacccgcacctc
gaaaccctcttcgactatgcgggggacgcagtgcgggtcctcgtcgacccggcggccatc
gccgacgaggagcggcggttcgacgaggagctcgcggccgcggtctcccgcgcccgcgac
cggggtgatctctttccggcgcccgagaccctctttctcccggctcccgaagcggcggag
cggctggccggccggctcgtcaccatcccctccctggccgtcgaggagacggggaaggag
ggggaaacggtccccctcgacacccaggagaacaccgacctgaaggtgaccctttccccc
aatggcgagggggtgctgaagcctctggtggcacggcttaacggctggctcgaggagcga
cagcgggtgatcgtcgtctgccaccagcggggccaggcccagcgcctctacgagctcctc
gccccctaccccctccccctcatcatctccgagcgtggctttccggcggagcgggagcgg
gacgacggcaaggtcgaggtgctcgtcggcgatctctcccgcgggttccgcctccccgaa
ggtcagctcgtggtcattgccgaggaggaaatcttcggccggcgccagaagcggcgtggc
gtctcggagctccgcaagaagcagatcatgacctccctggcggagctgaagccgggggac
tacatggtccacctggaccacggcatcggcatctaccgggggctgcagcacatcgccctc
agcggctgcgccggcgacttcctcctcctggagtacgcggggggagacaagctctacctc
ccggtggaccgtctgaacctcgtccagcgctacgtgggggccgagggggtggagccccgg
gtcgacaagttgggggggacatcctgggagaagaccaaggggaaggcccgggccgccgtc
caggagatggccggggagctcctccagctctacgccgcccgccagctccacgaaggacac
cccttctccccccccgacgagctttaccgggagttcgaggcctccttcgcctacgaggag
acctcggaccagatggcggccatcaccgacgtcatcgccgacatgacgagccgaaaaccg
atggaccgcctcgtctgcggcgacgtcggttacggcaagaccgaagtggccatgcggggg
gccttcaaggcggtcatggacggcaagcaggtggcggtcctggtccccaccacggtcctg
gcccagcagcacctggagaccttccgcgcccgcttcggcgcctacccggtcaccatcgag
atgctctcccgcttccgcacggcgaaggagcagaaggagatcctggagaaggtgaagaaa
gggaccatcgacgtcatcatcggcacccaccggctcctccagagcgacgtcgctttcaag
gacctggggctcctcatcgtcgatgaggagcagcgcttcggcgtcacccacaaggaaaag
ctgaagaaatacaaggcggtggtcgacatcctgaccctcaccgccaccccgatcccccga
accctctacatgtcgatgatggggatccgggacctctccatcatcgacaccccgccggtg
gaccggctggcggtgaagaccttcgtggcccgctcctccgacgacatcatccgcgaggcg
gtgatgcgggaactgcgccgggggggacaggtcttcttcgtccacaaccgggtccagtcc
atcatgaactgggccgagcacctgcgccgcatcgtccccgaggcgaagatcgccgtgggg
cacggccagatggaggaaggggagctggagaaggtgatgctcggcttcatgcacggggag
acgaacctcctcctctgcaccaccatcatcgaatcggggatcgacatccccaccgccaac
acccttatcgtggaccgggccgacaccttcggcctggcccaactctaccagctccggggg
cgggtcgggcgctccaagcagcgggcctacgcctacctcctcatccccggcgagggggcc
atctcgtccgatgcccgggagcggctgaagatcatccaggagctcacggaactgggggcc
ggcttccggctcgccacccacgacctggagatccgcggcgccggcgacctcctcggcgcc
aagcagtcggggaacatcgccgccgtcggtttcgatctctacacggaactgctggaagag
gcgatccagagcctcaagggaggggaacggatcgagcgggtggagccggagatcaacctc
cgcatccccgcctttgtccccgaggattacgtgcgggagacgaaccagcgtctcatcatc
tacaaaaagctcacccaggccgactccgaggaggaggtggacgaagtcatggcggagctg
gtggaccgcttcggcacgctgccactggccgcctcctatctcctggaggtgatgaagctg
cggatccatttcaagcggctcctcgtccggatggcggaattcgacggcagacgcctcagt
ttcacctttcacgagcggactcccgtcccccccgatacgatcatcggcctcattcgcacc
agcccgaagcggtaccagttcacccccgacttccggctcatcgccgagcttgccgacacg
agcttcgagggggtcatcgccgaggccagaaatctcttgaaaacgctgggttga
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integrated database retrieval system
