Geomonas paludis: M1B72_05640
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Entry
M1B72_05640 CDS
T08160
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
gpl
Geomonas paludis
Pathway
gpl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
M1B72_05640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gpl03000
]
M1B72_05640
03400 DNA repair and recombination proteins [BR:
gpl03400
]
M1B72_05640
Enzymes [BR:
gpl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
M1B72_05640
Transcription factors [BR:
gpl03000
]
Prokaryotic type
Helix-turn-helix
AraC family
M1B72_05640
DNA repair and recombination proteins [BR:
gpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
M1B72_05640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HTH_31
HHH
HTH_23
Motif
Other DBs
NCBI-ProteinID:
UPU37188
LinkDB
All DBs
Position
1314589..1316052
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AA seq
487 aa
AA seq
DB search
MSRDEERIWYAALKAKDARFDGHFFVGVSSTGIYCRPICRAKLPKPENCTFYTTAAAAEQ
AGFRPCLLCRPERAPGTAPVDASAALVHRAKVLLEENCGSGLSIEEIAGHLGCTDRHMRR
VFSAAYHVTPVQYLQTCRLLLAKSLLADTDLSVLDVAMAAGFGSLRRFNDLFKNKYRLAP
TALRRQSPRTQSRDNAIVLALGYRPPYQWRQMLDFLAQRAIPGVETIIDGQYLRTVHLVS
AEKQPVYGWVRVGHRQGNDVLTVTVDPALLPVLTQVLARIRHLFDLFCDPHAVYEVLGAM
NAIRPGLCTLGTRLPGCFDPFEMAVRAVLGQQITVKAARTLAARLVAALGTPVATGIEGL
SHVFPSPEQIVALDGPIDGHLGPLGITGARARTILELARAVVREEIDFKFGAEPETELKK
LLAVPGIGPWTAQYVAMRAMGWPDAFPDTDFGVKKALAPRTLKEISALAETWRPWRSYAT
VNLWNSL
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagggatgaagaacggatatggtacgcggcactgaaggcgaaggacgcccgcttc
gacgggcacttttttgtgggggtctcctccacgggaatctactgccgcccgatatgccgg
gcgaaactccccaaaccggaaaactgcaccttctacactacggctgctgcggcggaacag
gcgggcttccggccctgccttttgtgccggccggaacgcgccccggggacagcaccggtc
gatgcctccgccgccctggtccatcgggccaaggtcttgctggaggagaactgcggcagc
ggattgagtatcgaagagatcgccggccatctcggctgcacggaccgccacatgcgccgc
gtcttttcggctgcctaccacgtcaccccggttcaatatctgcagacctgccgcttgctg
ctcgccaagagcctccttgccgacaccgacctttcggtgctcgacgtggcgatggcggcc
ggcttcggcagcctgcggcgcttcaatgacctcttcaagaacaagtaccggctggcgcct
accgccttgcgccggcagtcgccccgcacgcaaagccgggacaacgccatcgtcctggcg
ctggggtatcgccccccttaccagtggcgccagatgctggactttctcgcccagcgcgcc
attcccggcgtggagacgataatcgacggccaatacctgcgcaccgtgcatctcgtcagc
gcagagaagcaacctgtatatggctgggtacgggtagggcaccggcagggaaacgacgtg
ctgacggtgacggtggacccggcccttttgccggtactgacccaggtgctggcccggatc
cggcacctcttcgatctgttctgcgatccgcatgcggtgtatgaggttcttggtgccatg
aacgccatccgccccggcctctgtaccctgggaacgcgcctacccggttgtttcgatcct
ttcgagatggcggtgcgggccgtgctggggcagcaaatcaccgtgaaggcggcccgcact
ctggccgcacggctcgtggcagcccttggcactcccgttgcgaccggcatcgaggggctc
agccacgttttcccatcacctgagcagatcgtcgccctggacgggcccatcgacgggcat
ctcggcccgctgggcatcaccggcgcccgggcgcgcaccattttggagctggcccgggcc
gtggtgcgggaagagatagatttcaagttcggagccgaaccggaaacggagctgaagaag
ctgctggccgttcccggcatcgggccgtggacggcgcagtacgtcgcgatgcgagccatg
ggatggcccgatgccttccccgatacggatttcggggtgaaaaaggcgttggctccgcgc
accttgaaggaaatatcggcgttggccgagacgtggcgcccctggcgtagttacgcgacg
gtcaatttatggaactcactgtaa
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