KEGG   Geomonas paludis: M1B72_05840
Entry
M1B72_05840       CDS       T08160                                 
Name
(GenBank) ATP-dependent RecD-like DNA helicase
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
gpl  Geomonas paludis
Pathway
gpl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:gpl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    M1B72_05840
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gpl03400]
    M1B72_05840
Enzymes [BR:gpl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     M1B72_05840
DNA repair and recombination proteins [BR:gpl03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     M1B72_05840
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_RecD2 OB_YrrC SH3_13 UvrD_C_2 HHH_5 AAA_11 Viral_helicase1 PIF1 Helicase_RecD nSTAND3 AAA_16 RsgA_GTPase NTPase_1 SLFN-g3_helicase HHH MeaB AAA_22 DEAD AAA_28 HHH_2 NACHT PhoH MoCF_biosynth TrwB_AAD_bind AAA_29 UvrD-helicase T2SSE TraI_hel_assoc_N cobW NPHP3_N ABC_tran AAA_14 AAA ATP_bind_1 AAA_5 MMR_HSR1 MobB DUF4926 NB-ARC ATPase_2 TsaE SRP54 ABC_ATPase CbiA KAP_NTPase
Other DBs
NCBI-ProteinID: UPU37228
LinkDB
Position
1367519..1369708
AA seq 729 aa
MKERSPAEHPVERIAGSLERVTFHSEETGFCVLRVKVAGHRELVTVTGSAATVTPGEFLE
CTGSWHNDRTHGMQFKAEHLKVVPPTTLEGIEKYLGSGMVHGIGHHFAKVLVQAFREEVF
DVIENRPERLLELPGIGRKRMESVASAWVEQKAIREIMVFLQSNGLGTARAVRIYKCYGN
EAIFKVTENPYRLALDIQGIGFKTADALAANLGIARDSLIRAQAGVRHVLQELSGSGHCA
AARAELVQSAASLLDIPPAIIEAAIDAEIAEQNLVAEPIGGRPCLFLTPLHRAEVGVAAS
LSRLSGGEPPWGGVVAEEAIPWAESHNGITLSESQREAIRLALKSKVVVVTGGPGVGKTT
LVNSILAIIRSQHLRVTLCAPTGRAAKRLTESTGIEAKTIHRLLEFDPQSFGFKRDRDNP
LATDLLVMDEASMVDVVLMHKLLPAVPDHAGLIIVGDVDQLPSVGPGCVLADIIDSGAVA
TVRLTEIFRQAAGSRIIVNAHRINRGELPLQDEGKELADFYFIPAASAEDIHGKLLQVIT
ERIPKRFGFDPVRDIQVLTPMNRGGLGTASLNAELQGVLNGKAEPRVTRFGTGFAPGDKV
IQTVNNYEKEVFNGDIGRIVEVRQEEGTLSVDFDERLVEYQFGELDEVSLAYATSIHKSQ
GSEYTAVVIPLSMQHYTMLERNLIYTAVTRGKKLVVVIGEPKALSMAVRTNKSQRRMTDL
ARRIGSAPA
NT seq 2190 nt   +upstreamnt  +downstreamnt
atgaaagaaagatcacctgctgagcacccggtcgaacggatcgccggctcgctggagagg
gttaccttccacagcgaggagacgggcttttgcgtgctgcgggtgaaggttgccgggcac
cgcgagctggtgacggtgacggggagcgccgccacggtgacgccgggggagttcctggag
tgcaccggttcctggcacaacgaccgcacccacggcatgcagttcaaggcggagcacctg
aaggtggtgccccccacgacgctggaggggatcgagaagtacctcggttcgggcatggtg
cacggcattggccaccacttcgccaaggtgctggtgcaggcctttcgcgaggaggtcttc
gacgtcatcgagaaccgtccggagcgccttctggaactccccggcatcggccgcaagcgc
atggaatcggtggcgagcgcctgggtggagcagaaggcgatccgcgagatcatggtcttt
ttgcagtccaacggcctgggcaccgcgcgcgccgtgcgcatctacaagtgctacggcaac
gaagcgatcttcaaggtcaccgagaacccgtaccggctcgccctcgacatccaggggatc
ggcttcaagaccgccgacgccctggccgccaacctcggcatcgcccgcgactccctgatc
cgcgcccaggcgggcgtgagacacgtgctgcaggagctctccgggagcggccactgcgcc
gcggcccgcgccgaactggtgcagagcgccgcctccctgctggacattccccctgccatc
atcgaagccgccatcgacgcggagatcgccgagcagaacctggtcgccgagcccatcggc
ggccgcccctgcctgttcctcacgccgctgcaccgcgccgaggtgggcgtcgccgcgagc
ctgtcgcgcctctccggaggggagccgccgtgggggggcgtggtcgccgaggaagccatc
ccctgggcggagagccacaatggcatcaccctgtccgaatcgcagcgcgaggccatccgc
cttgccctgaagagcaaggtggtcgtggtgaccggcggccccggggtgggcaagaccacg
ctggtcaacagcatcctggccatcatccgctcgcaacacctgagggttaccctgtgcgcc
cccaccggtcgtgcggccaagcggctcaccgaatccaccggcatcgaggccaagaccatt
caccgcctgctggagttcgacccgcagagcttcggcttcaagcgcgaccgggacaacccg
ctcgccaccgacctcctggtcatggacgaggcctccatggtcgacgtggtgctgatgcac
aagctcctccccgccgtcccggaccacgccgggctgatcatcgtgggggacgtggaccag
cttccttcggtcggccccggctgcgtcctcgccgacatcatcgactccggcgccgtcgcc
accgtgcgcctcaccgagatcttccgccaggccgcgggctccaggatcatcgtcaacgcc
caccgcatcaaccgcggcgaactgccgctgcaggacgaggggaaggaactggcggacttc
tacttcatcccggctgcgagcgccgaggacatccacggcaagctgctccaggtgatcacc
gagcgcatccccaagcgtttcggcttcgacccggtgcgcgacatccaggtgctcactccc
atgaaccgcggcggcctgggcaccgcgtcgctcaacgcggaactgcagggggtgctgaac
ggcaaggcggagccgcgggtgacccgcttcggcaccgggttcgcgccgggcgacaaggtg
atccagacggtgaacaattacgagaaggaagtcttcaacggcgacatcggccgcatcgtg
gaggtgcgccaggaggaggggacgctgagcgtcgatttcgacgagcggctggtagaatac
cagttcggcgaactggacgaggtgagcctcgcctacgccaccagcatccacaagagccag
ggttccgagtacacggccgtggtgatcccgctctccatgcagcactacaccatgctggag
cgcaacctgatctacaccgcggtgacccggggcaagaagctggtggtggtgatcggcgag
cccaaggcgctctccatggcggtgcgcaccaacaagtcgcagcgcaggatgaccgacctg
gcgcgcaggatcggcagcgcaccggcgtga

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