Geomonas paludis: M1B72_06245
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Entry
M1B72_06245 CDS
T08160
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
gpl
Geomonas paludis
Brite
KEGG Orthology (KO) [BR:
gpl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gpl03016
]
M1B72_06245 (truB)
Enzymes [BR:
gpl01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
M1B72_06245 (truB)
Transfer RNA biogenesis [BR:
gpl03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
M1B72_06245 (truB)
Prokaryotic type
M1B72_06245 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
DKCLD
PseudoU_synth_2
Motif
Other DBs
NCBI-ProteinID:
UPU38261
LinkDB
All DBs
Position
1455038..1455922
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AA seq
294 aa
AA seq
DB search
MNGFFVIDKPAGVTSHDIVSKVRRAINQKKVGHTGTLDPFATGVLPVAVGEGTKAIQFLD
ESEKEYRAVLRLGIATDTQDLTGAVISEREWSHLTAEDLERLVPQFLGLQKQLPPMFSAI
KQGGVPLYKLARKGIEVEREEREVEIHSLTFEWIRLPEACFTVRCSRGTYVRTLACDIGE
ALGCGAHLLELRRTRSGLFREADAISIEALAGAADQEALLMPLDRALDHLRALALTEAGG
KKVLNGVVPQAHDFIEPPGDFAVGEQVRLYLGERFAAVAEYDKLKGLRLARVFN
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
ctgaacggctttttcgtgatcgacaagccggccggtgtcacctcgcatgacatcgtgtcc
aaggtccgtcgcgccatcaatcagaagaaggtagggcacaccgggaccctggatcccttt
gccaccggcgtgttgccggtcgcggtgggggaggggaccaaggcgatccagttcctggac
gagtcggagaaggagtaccgggccgtgctgcggctgggcatcgccaccgacacccaggac
ctgaccggagcggtcatctccgagcgggagtggtcgcacctgacggccgaggacctggag
cggctggtgccgcagttcctcggactccagaagcagcttcctcccatgttctcagccatc
aagcagggcggggtgccgctgtacaagctggccaggaaagggatcgaggtggagcgcgag
gagcgcgaggtcgaaatccactcgctcaccttcgaatggatccggctccccgaggcctgc
ttcaccgtgcgctgctcgcggggcacctacgtgaggacgctcgcctgcgacatcggcgag
gcgctcggttgcggcgcccacctccttgaattgcggcgcacaaggagcggtctcttccgc
gaggccgacgccatcagcatcgaggcgctggccggggccgccgaccaggaggcgctgctc
atgccgctggaccgggcgctggatcatctgagggcgctggcgctcaccgaggcggggggg
aagaaggtgctgaacggcgtggtgccgcaggcgcatgatttcattgaacctcccggcgat
tttgccgtgggtgagcaggtgcgactctatctgggggagcgctttgcggcagtagcggag
tacgacaagctcaaagggctgcgcctggcccgtgtgttcaattag
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