Geomonas paludis: M1B72_11495
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Entry
M1B72_11495 CDS
T08160
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
gpl
Geomonas paludis
Brite
KEGG Orthology (KO) [BR:
gpl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gpl03009
]
M1B72_11495 (rlmD)
Enzymes [BR:
gpl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
M1B72_11495 (rlmD)
Ribosome biogenesis [BR:
gpl03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
M1B72_11495 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Cons_hypoth95
Methyltransf_15
MTS
Methyltransf_25
Methyltransf_4
PrmA
PabTrmU54_TRAM_dom
Methyltransf_11
PCMT
TehB
CBP_BcsQ
Motif
Other DBs
NCBI-ProteinID:
UPU34078
LinkDB
All DBs
Position
complement(2718526..2719839)
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AA seq
437 aa
AA seq
DB search
MADQFVVIESLCYGGAGFGRVDGKACFVPFTAPGDRVRIRVVKEKRSFVEAELVELVEPA
PLRIAPTCPVFGQCGGCDWQFLPYQEQLQQKGAIFADTLARIGKVPREKVLPVAASPDHY
GYRSRVQVKVALRAGRLQFGFFRTGSHDVVDFGAGCPLAQPQLNRMATEFRALLPTLPQA
EWIHQVDLSIGDDGEGIAIVHSRGGGPELVERLARDRAQLPSVAGAFVSAGRKGELEQVF
GIDALTYRVPAGLALGSKELQLRFGRGGFSQVNYRQNLELIRTACEWAGLTGQERVLDLY
CGNGNISLPLALNAAQVLGIEGYAPSIVDAVANAEHNGIENAAFQVSDAAQAVRRMVKRK
ERFDLVLLDPPRGGAEAAAELAGLAPQKIIYVSCDPATLARDLASLSSNGYQVTRSKPVD
MFPQTYHLESVTELVRS
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggctgatcagttcgtcgtcatagaaagtctttgttacggcggcgccggtttcggcagg
gtggacggcaaggcgtgtttcgtccccttcaccgctcccggcgaccgggtcaggatccgg
gtggtgaaggagaagcgctccttcgtcgaagccgaactggttgaactggtcgagcctgcg
ccgctgcgcattgccccgacctgcccggtcttcggccagtgcggtgggtgcgactggcag
ttcctgccgtatcaggagcagttgcagcaaaaaggcgccatcttcgcggacaccctggcg
cgcataggcaaggtgcctagggaaaaggtattgccggtggctgcctcgccggaccattac
ggctaccgctcgcgggtgcaggtgaaggtcgcgcttcgagccggccggttgcagttcggc
tttttccgcaccggttcccacgacgtggtcgatttcggtgccggctgtccgctggcccag
ccgcagttgaaccgcatggcgacggaattccgggccctcttgccgacgctgccgcaggcg
gaatggatccaccaggtcgacctctccatcggcgacgacggggaggggatcgccatcgtg
cacagcaggggaggcggccctgaactggtggagcgtctggcccgggatcgggcccagctt
ccgtcggttgccggcgccttcgtgtccgccggccgcaaaggggaactggagcaggtcttc
ggcatcgacgccctgacctaccgggtccccgccggccttgctctcggctccaaagaactg
cagcttcgcttcgggcggggcggcttttcccaggtgaactaccggcagaacctggagttg
atccgtactgcctgtgaatgggcggggctgaccgggcaggagcgggtgctcgacctgtac
tgcggcaacggcaatatttccctgccgctggcgctgaacgcggcacaggtgctggggatc
gaggggtacgcgccttccatcgtggacgcggtcgccaatgcggagcataacggcatcgaa
aacgccgccttccaggttagcgatgcggcgcaggccgtcaggcggatggtaaagcgcaag
gaacgcttcgacctggtgctgctcgaccctccgcgtggaggcgccgaggcggctgccgaa
ctggccggcctggcgccgcagaagatcatctatgtttcctgtgatccggccacgctggcc
cgcgatctcgcttcactttccagcaatgggtaccaggtgacccgctccaaaccggtggac
atgttcccgcagacctaccacttagagagcgtcaccgagctggtacgtagctaa
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