Geomonas paludis: M1B72_12190
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Entry
M1B72_12190 CDS
T08160
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
gpl
Geomonas paludis
Pathway
gpl03410
Base excision repair
gpl03430
Mismatch repair
gpl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
M1B72_12190 (recJ)
03430 Mismatch repair
M1B72_12190 (recJ)
03440 Homologous recombination
M1B72_12190 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpl03400
]
M1B72_12190 (recJ)
DNA repair and recombination proteins [BR:
gpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
M1B72_12190 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
M1B72_12190 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M1B72_12190 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UPU34210
LinkDB
All DBs
Position
complement(2881151..2882869)
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AA seq
572 aa
AA seq
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MKPVTHRSWRAREADAEAVSGLTRAGVAPLLARLLAHRGVCAPEEADGYLNPVLSRLHDP
MLMAGMEQAVARLVRALKAKERVCVHGDYDVDGVTSCAVLISFFQKIGLDCCHYIPKRLT
EGYGLSEQGVTAAARAGATVLVTVDCGITAVNEARLCREAGVDLIVTDHHSPGEELPDAC
AVINPLQPGCPFPFKSLAGVGVAFHLVVALRARLRADGYFKPGAEPDLKEYLDLVALGTI
ADVVPLLGINRVLVTYGLKQLCAGTRVGVEALKEVAGITGEVGCGAVGFRLAPRINAAGR
LEDAALGLELLLCRDPQRARDIARELDEANAERQALERATFEEARAMLEQGACSGRKSIV
LGSQEWHPGVIGIVASRIVELFHRPVILFAFDGATGRGSGRSISRFHLLDAIKECADHLL
RFGGHSHAAGLSIVQEELERFALRFDEAAREALDADALTPTLAFDLELDGDEITADLVRQ
LEQMKPFGMGNPEPLFVLKGARVLESRVLKGGHLKLKVGQGGESFDAIGFGLAEAGLPQG
NVDLLFAPTINVWNGRSSLQLTVKDLRPEGTC
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctgtcacccatagaagctggcgcgccagggaggcggatgccgaggcggtgtcc
ggcctgacccgggccggcgtcgctccgcttttggcgcgccttttggcccaccgcggcgtc
tgcgcccccgaagaggccgacggctacctgaacccggtgctgtcccggctgcacgatccc
atgctcatggccggcatggagcaggcggtggcgcggctggtccgggcgctcaaggccaaa
gagcgggtctgcgtgcacggcgattacgacgtcgacggcgtcacctcctgcgccgtcctg
atcagcttcttccagaagatcggcctcgactgctgccactacattcccaagcgcctcacc
gaggggtacggcctctccgagcagggggtgaccgcggcggcccgcgccggcgccaccgtg
ctggtcaccgtcgactgcggcattaccgccgtcaacgaggcgcgcctgtgccgcgaggcc
ggcgtcgacctcatcgtcaccgaccaccactcgccgggcgaagagctcccggacgcctgc
gccgtcatcaacccgctgcagcccggctgcccgttcccgttcaagtcactggccggggtc
ggcgtcgccttccacctggtggtggcactgcgcgcccggctgcgcgccgacggctacttc
aagcccggcgccgagcccgatctcaaggagtacctggacctggtcgccctgggcaccatc
gccgacgtggtgccgcttctgggcatcaaccgggtgctggtcacctacggcctgaagcag
ctctgcgccggcacccgggtgggcgtcgaggcgctcaaggaggtggccgggatcacgggt
gaggtgggttgcggcgcggtcggcttccggctggccccgcgcatcaacgcggccgggagg
ctcgaggacgccgcgctcgggctcgaactgctgctctgccgcgacccccagcgcgcccgc
gacatcgcccgcgaactggacgaggccaacgccgagcgccaggccctggagcgcgccacc
ttcgaggaggcgcgcgccatgctggagcagggggcctgcagcggccgcaagagcatcgtg
ctcggctcgcaagagtggcaccccggggtcatcggcatcgtcgcctcgcgcatcgtggag
cttttccatcgtccggtgatcctgttcgccttcgatggcgccacgggcaggggctcgggg
cgcagcatctcccgttttcaccttttggacgccatcaaggagtgcgccgatcacctgctg
cgcttcggcggacacagccacgccgccggcctctccatcgtgcaggaggaactggagcgc
ttcgcgctgcgcttcgacgaggcggcccgggaagccctcgacgccgacgcactcaccccc
acgctcgccttcgacctggagctggatggcgatgagatcaccgcggacctggtgcggcag
ctggagcagatgaagcccttcggcatggggaaccccgaaccgctcttcgtactgaagggg
gcccgggtgctcgagagccgggtgctcaagggggggcacctgaagctcaaggtagggcag
gggggggagagtttcgacgccatcggcttcggtctcgccgaggcgggcctgccgcagggg
aacgtcgacctcctctttgcccccaccatcaacgtctggaacggccggagttcgctgcag
ctgaccgtgaaggacctgcgcccggaggggacgtgctga
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integrated database retrieval system
