Geomonas paludis: M1B72_14145
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Entry
M1B72_14145 CDS
T08160
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
gpl
Geomonas paludis
Pathway
gpl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M1B72_14145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpl03019
]
M1B72_14145
Enzymes [BR:
gpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M1B72_14145
Messenger RNA biogenesis [BR:
gpl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M1B72_14145
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
CMS1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UPU34585
UniProt:
A0A6V8MZ81
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All DBs
Position
3328871..3330301
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AA seq
476 aa
AA seq
DB search
MKFTELQLPELVQKGIEETGFTDCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLITVF
TKLLSQQKTGAVNHPRALILAPTRELVVQIEKDAQALGKHTGFTVQAIYGGVDYMKQRDA
LKAGADIVIGTPGRLIDYLKQKVYSLKDIEALVIDEADRMFDMGFIADLRFILRRLPPYD
KRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQVLYHVARKEKFPLLLGL
LRKMGMERTMIFVNTKREAEYLQDRLNANEFPAKVISGDVEQRKRMKILADFKAGLLPIM
IATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAISLADEDGAFFIEA
IQEFIKQKIPTEWAEDDMFVHDYKRTARPPRRTEEKPGGRGGKSGGRGEKSGRGESRGRG
GKSGSGMEKAEQKEAQPTAETAPTGEAAANGDAPAKRKRRRRKPKAKPAEQQPEQP
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaccgagctgcagctgccggaactggtccagaagggcatcgaggaaaccggc
ttcaccgactgcacaccgatacaggaaaaggcgctgcctttggccctcaccggcaaggac
gtcgcgggccaggcccagaccggcaccggcaagaccgccaccttcctcatcaccgttttc
accaaactgctgagccagcagaaaacaggcgccgtcaaccacccccgcgccctcatcctc
gcaccgacccgtgaactggtggtccagatcgagaaggacgcccaggccctcggcaagcac
accggcttcaccgtccaggccatctacggcggcgtggactacatgaagcagcgcgacgca
ctgaaggccggcgccgacatcgtcatcggcacgccgggacgcctcatcgactacctgaag
cagaaggtctactccttgaaggacatcgaggccctggtcatcgacgaggccgaccgcatg
ttcgacatgggcttcatcgcggacctgcgcttcatcctgagaaggctccccccctacgac
aagcgccagaacctcctgttctccgccaccctgaacacccgggtcatggaactcgcctac
gagttcatgaacatgccggaaaaggtctcggtgacaccggagcagatgaccgccgagcgc
gtggagcaggtgctctaccacgtggcgcgcaaagagaaattcccgctgctgctcggcctg
ctccgcaagatgggcatggagcggaccatgatcttcgtgaacaccaagcgcgaagccgaa
tacctgcaggaccgcctcaacgccaacgagttcccggccaaggtgatctccggcgacgtc
gagcagagaaagcggatgaagatccttgccgatttcaaggccggcctgctgccgatcatg
atcgccaccgacgtcgcctcccggggcatccacatcgaaggggtctcccacgtcatcaac
tacgacctgccccaggactgcgaggattacgtgcaccgaatcggccgcactgcccgcgcc
ggcgccgaggggatggcgatctcgctggccgatgaggacggcgccttcttcatcgaggcc
atccaggagttcatcaagcagaagatcccgaccgagtgggccgaggacgacatgttcgtc
cacgactacaagagaaccgcccgccctccgcgccgcaccgaggagaagcccggcggcagg
ggcggcaaatccggcggacgcggcgagaaatcagggcgcggtgaatcccgcggcagaggc
ggtaaatccggttccgggatggagaaggcggagcagaaggaagcccagccgaccgcggaa
accgcacctacaggggaggcggccgctaacggcgatgcaccggccaagcgcaaacgccgt
cgccgcaagcccaaggccaagccggcagagcagcagcccgagcagccgtga
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