Geomonas paludis: M1B72_14640
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Entry
M1B72_14640 CDS
T08160
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
gpl
Geomonas paludis
Brite
KEGG Orthology (KO) [BR:
gpl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gpl03009
]
M1B72_14640 (rlmD)
Enzymes [BR:
gpl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
M1B72_14640 (rlmD)
Ribosome biogenesis [BR:
gpl03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
M1B72_14640 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_15
TRAM
Cons_hypoth95
PrmA
Methyltransf_32
Methyltransf_11
TPMT
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
UPU34679
UniProt:
A0ABY4LA97
LinkDB
All DBs
Position
3458560..3460218
Genome browser
AA seq
552 aa
AA seq
DB search
MKNTRKPKQFSDSSKPFRKETSKVPAAKKPAARPERPATADPISGKSARPAAHKPRDQRD
QRDQREHAPARGIKRTDAKGSERQAKGGNARPARAAEERHPALHSGQVLEVQIQTNNDEA
YGVAYHEGTRILVAGGLAGETLVVKITYVGRRESFANIIKILKRSPDRVPSPACTMGRAC
DGCGLMQMRYPAQLSWKKGLVTRQIRKYPSLADAVIHDTMASPNELGYRNTAKLVVAGKH
GDPVIGIYRRNSHDVLEIADCALHHPLINKVVKAAKAGIKKGKVQIYNPKSEMGLLRYLV
VRVAEPSNQVMVVFVTTDQGYNEMHHLAKFIQQAVPEVAVVAQNINTSTGNVIFGHKDRS
ITKAQTLKAYIGDKSFNLSPHSFFQVNSGAARIIYEKVREFARLTGKERVIDLYCGIGGI
SLFLADKAREVVGIEVVDAAVADATANAAMNRAENCSFEAGDAVHLIDEIGEEGGADLIV
LNPPRKGCDEKVLKSVAAIKPQRIIYVSCSPETLARDLDILAQLGYKTLEVQPVDMFPQT
VHVEDVALLEKV
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaataccagaaaaccaaagcaattctctgacagttccaaaccctttcgcaaagaa
acatccaaagtacccgcggcgaaaaagcccgctgccaggcctgagcgccctgccacagcc
gaccccatcagcgggaagagcgcacgcccggctgcgcacaagccgcgcgatcagcgcgat
cagcgcgaccagcgcgagcacgcacccgccaggggtataaagaggaccgacgcaaaagga
tccgagaggcaggcgaagggtgggaatgcacgcccggcccgcgccgccgaagagcgccac
cccgcgctgcatagcgggcaggtgctggaagtccagatacagaccaacaatgacgaagcc
tatggggtcgcctaccacgaggggaccaggatcctcgtcgccgggggactggccggcgaa
accctggtggtcaagatcacctatgtcgggcgcagggaatccttcgccaacatcataaag
atcctgaaaaggtcgcccgaccgcgtcccctctcccgcctgcactatgggcagggcctgc
gacggctgcggcctgatgcagatgcgctacccggcccagctctcctggaagaaggggctg
gtcaccaggcagatccggaaatacccctcgcttgccgacgcggtcatccacgacaccatg
gcctcgcccaacgagcttggctaccgcaataccgccaagctggtggtcgcgggcaagcac
ggcgacccggtgatcggcatctatcggcgcaacagccacgatgtcttggagatcgcggac
tgcgccctgcaccacccgctgatcaacaaggtggtcaaggccgccaaggcgggcatcaag
aaggggaaggtacagatctacaacccgaagagcgagatgggactgttgcgttacctcgtg
gtgcgggtggccgagccgagcaaccaggtgatggtggtgttcgttaccaccgaccagggt
tacaacgagatgcaccatctggccaagttcatccagcaggcggtgcccgaagtcgccgtg
gtggcgcaaaatatcaacacctcgaccggcaacgtgatcttcggccacaaggaccgctcc
atcaccaaggcgcagaccttgaaggcctacatcggggacaagagtttcaacctgtcgccg
cattccttcttccaggtgaacagcggcgcggcccgcatcatctacgagaaggtgcgcgag
tttgcgcgtctgaccggcaaggagcgggtgatcgacctttactgcggcatcggcgggatc
tcgctgttcctggccgacaaagcccgcgaagtggtgggtatcgaagtggtagatgcggcc
gtcgccgacgccaccgccaacgcggccatgaaccgcgccgaaaactgcagcttcgaggcc
ggcgacgccgtccacctcatcgacgagatcggcgaggaaggtggcgccgacctgatcgta
ctcaatccgccccggaagggttgcgacgagaaggtgctgaagagcgtggcggccatcaag
ccgcagcgtatcatctacgtctcctgctcacccgagacgctggcgcgcgacctggatatc
ctggcgcagctgggttacaagacgctggaagtgcagccggtggacatgttcccgcagacg
gtgcacgtcgaggacgtggcactgctggaaaaggtctaa
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