Geomonas paludis: M1B72_15590
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Entry
M1B72_15590 CDS
T08160
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gpl
Geomonas paludis
Pathway
gpl03030
DNA replication
gpl03430
Mismatch repair
gpl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M1B72_15590 (dnaE)
03430 Mismatch repair
M1B72_15590 (dnaE)
03440 Homologous recombination
M1B72_15590 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gpl03032
]
M1B72_15590 (dnaE)
03400 DNA repair and recombination proteins [BR:
gpl03400
]
M1B72_15590 (dnaE)
Enzymes [BR:
gpl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
M1B72_15590 (dnaE)
DNA replication proteins [BR:
gpl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
M1B72_15590 (dnaE)
DNA repair and recombination proteins [BR:
gpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
M1B72_15590 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
PHP_C
Motif
Other DBs
NCBI-ProteinID:
UPU34860
UniProt:
A0ABY4LB80
LinkDB
All DBs
Position
complement(3677774..3681250)
Genome browser
AA seq
1158 aa
AA seq
DB search
MDSPANFVHLHLHSQYSLLDGAIRIGDLVKKAKEYHMPAVAVTDHGNMFGSLEFYLKAQD
KGIKPILGCEVYIAPGSRLDKKAPTAADPVTSYHLILLAENMTGFKNLCYLSSAGYKDGF
YRRPRIDKELLEKHREGLICLSACLQGEVAYLAGRNKMEEAKAAAIWYADMFPGSYYLEI
QENGIPEQTIANRRVMEIARELNLPLVATNDCHYLNKEDAKAHEILLCIQTGKTMSDPSR
MRFTTEAFYVKSPEEMARDFHYCPEALENTVKIAERCHYEFDFKTYHFPAYEAPPGETLD
DQLERESIEGLKLRLEKIKIKYPDLTPEQEQAYHDRLRIELDCIRHMGFPGYFLIVADFI
NWAKDHGIPVGPGRGSAAGSLVAYCIRITDIDPMPYNLLFERFLNPERISMPDIDVDFCQ
DRREEVIQYMVERYGREKVCQIAAFGTMAARGVIRDVGRALDLTFADVDKIAKLVPEVLG
ITLDKAIEQEPKLKELMAADPKVNEVMTVALRLEGLARHISTHAAGLVVAPRQMEDFCPV
YKDQKTGSLTTQYSMKYVEKVGLVKFDFLGLKNLTVIDNACKHIRNGKDPNFDITLLTDD
DPETYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLGSGMVDDFI
ERKHGRKQTVYDLPQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGADLLRRAMGKKDA
EQMAKERLKFMEGSEKLGLDSKKCAAIFDLMAKFAEYGFNKSHSAAYALVAYQTAYLKAH
YPVEFMAALLTEDMSNTDKVIKSIGDCREMGIEVLPPDINESLRSFRVLDTAMRFGLGAV
KNVGEGAIEAILEARGDEPFKDIFDFCERVDLRRCNKRVIEALIKSGAFDCTKAKRSQLM
AVLEDAAAQGQRVQQERESAQVSLFGMAEIQRGSNGSGNRLPDIPEWDEKYRLGCEKDAI
GFFITGHPLDRYVADMRRFSNVDCSSINEAKDKSEVKICGVPASLKEIMTKKGDRMGFVT
LEDLVGSLEVVVFSDVYARCSEFLKGDDPVHITGTVEHGEKGAKIMASDIVLLRDLVERE
TRRVNFTIDAKEADPGKLKTLKEIISRYQGICRSFLHLDIENSSRVTIRLSDVYKVAASE
ELTVEVSNLFGYNAVSFE
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggattcacctgccaatttcgtacatcttcatctgcactcccagtactccctgctggac
ggcgccatccgtatcggcgacctggtcaagaaggccaaggagtatcacatgccggcggtg
gcggtcaccgaccacggcaacatgttcggctccctcgagttctatctgaaggcccaggac
aaggggatcaagccgatactcgggtgtgaggtctacatcgcccccggctcccgtctggac
aagaaggcccccaccgccgcagacccggtcaccagctaccacctcatcctgctggccgag
aacatgaccggtttcaagaacctctgctacctcagttccgcgggctacaaggacggcttc
taccgccgcccccgcatcgacaaggaactgctggagaagcacagggaaggcttaatctgc
ctctccgcctgtctccagggagaggtcgcctatctggccggcaggaacaagatggaggag
gccaaggctgccgccatctggtacgccgacatgttcccggggagctactacctcgagatc
caggagaacgggatcccggagcagaccattgccaaccggcgggtgatggagatcgcgcgc
gagctcaacctgccgctggtcgccaccaacgactgtcactatctcaacaaggaagacgcc
aaggcgcacgagatcctgctctgcatccagaccggcaagaccatgagcgacccgagccgg
atgcgcttcaccaccgaggccttctacgtgaagagcccggaggagatggcgcgggacttc
cactactgcccggaggcgctggaaaacaccgtcaagatcgccgaacgctgccactacgag
ttcgacttcaagacctatcactttcccgcctacgaggcgccgccgggcgaaaccctcgac
gatcagctcgagcgcgagtccatcgaggggctcaagctgcgcctcgagaaaatcaagatc
aagtacccggacctgaccccggaacaggagcaggcctatcacgaccgcctgcgcatcgag
ctggactgcatcaggcacatggggttcccgggctacttcctcatcgtcgcggacttcatc
aactgggccaaggatcacggcatcccggtcggaccgggcaggggctcggcggccggttcg
ctggtcgcctactgcatcaggatcaccgacatcgatccgatgccctacaacctgctgttc
gaacgattcctgaacccggaacgtatctccatgccggatatcgacgtcgacttctgccag
gaccgccgcgaagaggtgatccagtacatggtcgagcgctacggccgggagaaggtgtgc
cagatcgcggcgttcggtaccatggccgcccgcggcgtcatccgcgacgtcgggcgcgcg
ctcgacctcacctttgccgacgtggacaagatcgccaagctggtgcccgaggtgctgggc
atcacgctggacaaggcgatcgagcaggagcccaaactcaaggaactgatggcggccgac
ccgaaggtgaacgaggtcatgaccgtcgcgctgcgcctggaggggctcgcacgccacatc
tcgacccacgccgccggcctcgtggtcgcgcccaggcagatggaagacttctgcccggtc
tacaaggaccagaagaccggctcgctgaccacccagtactcgatgaagtacgtggagaag
gtgggcctggtgaagttcgacttcctcggtctcaagaacctcaccgtcatcgacaacgcc
tgcaagcacatccgtaacggcaaggatcccaacttcgacatcacgctcctgaccgatgac
gatccggaaacctacaagcttttgcaggccggcaacaccaccggcgtgttccagctcgag
tcgagcggcatgaaggagcttctggtcaagctcaagccgtcctgcttcgaggacatcatc
gcggtctgcgccctctaccgtccgggtccgctcggctccggcatggtggatgacttcatc
gaaagaaagcacggccgcaaacagacggtttacgatctgcctcagttggagcccgtcctc
aaggacacctatggcgtcatcgtctaccaggaacaggtcatgcagatctcccgttccctg
gcaggctattcgctcgggggcgcggacctcctgcgccgcgccatgggtaagaaagacgcc
gaacagatggcgaaggaacgcctgaagttcatggaagggtccgagaaactggggctcgat
tccaagaagtgcgccgccatcttcgacctcatggccaagttcgccgagtacggcttcaac
aagtcgcactccgccgcctacgccctggtcgcgtaccagaccgcctacctgaaggcccac
tacccggtagagttcatggccgccctcctcaccgaggacatgagcaacaccgacaaggtg
atcaagagcatcggcgattgccgcgagatgggcatcgaggtgctgccgccggacatcaac
gagtcgctgcgctccttccgggtgctggacaccgccatgcgcttcggcctcggcgccgtc
aagaacgtgggggagggagccatcgaggccatcctggaggcccgcggcgacgagcccttc
aaggacatcttcgacttctgcgagcgggtcgacctgcgccgctgcaacaagagggtcatc
gaggcgctcatcaaaagcggcgccttcgactgcaccaaggcgaagcgctctcaactcatg
gccgttctggaggatgccgccgcccaggggcagcgcgtgcagcaggagcgcgagagcgcc
caggtgtcgctcttcggcatggccgagatccagcgcggttccaacgggtcgggcaaccgg
ttgcccgacattcccgagtgggacgagaagtaccgcctggggtgcgagaaggacgcgatc
ggcttcttcatcaccggccacccactggaccgctacgtggccgacatgcgccgcttctcc
aacgtcgactgctcatcgatcaacgaggccaaggacaagagcgaggtgaagatctgcggc
gtgccggcgagcctcaaggagatcatgaccaagaagggtgaccggatgggcttcgtgacc
ctggaagacctggtcggctcgctggaggtggtggtcttctccgacgtctatgcccgctgc
tccgagtttctcaagggcgacgacccggtgcacatcaccggcacggtcgagcacggcgag
aagggtgccaagatcatggccagcgacatcgtgctcctgcgcgacctggtggaacgtgag
acgcgcagggtgaacttcaccatcgacgcgaaggaagccgatccgggcaagctcaagaca
ctcaaagagatcatctcgcgctaccagggaatctgtcgcagcttcctgcacctcgacata
gagaacagttcgcgagtcaccatccgtctctccgacgtatacaaagtggcggccagtgaa
gaattaacagtggaagtgagtaacctcttcggctataatgccgtgtccttcgagtag
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integrated database retrieval system
