Geomonas paludis: M1B72_16675
Help
Entry
M1B72_16675 CDS
T08160
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gpl
Geomonas paludis
Pathway
gpl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M1B72_16675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpl03019
]
M1B72_16675
Enzymes [BR:
gpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M1B72_16675
Messenger RNA biogenesis [BR:
gpl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M1B72_16675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
Flavi_DEAD
AAA_22
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UPU35071
LinkDB
All DBs
Position
complement(3921710..3923128)
Genome browser
AA seq
472 aa
AA seq
DB search
MEFKQFNLHPKVQAGVEAVGYQTPTPIQLQAIPAVIAGQDVLGLAQTGTGKTAAFGLPML
HRLVEGHRGKVRGLVLAPTRELAEQINESLNALAQQTRLKSITVYGGVNINTQIKKLKEG
TDIVVACPGRLLDHISQGTVDLSGVEVLVLDEADQMFDMGFLPDVRKILRALPGKRQNLM
FSATMPDDIRRLAHEILCRPVTVQVSRTAPAATVSHALYPVGQHLKTPLLFELLKHTDTE
SVLIFTKTKYRAKRLGEQLEKSGYKATSLQGNLSQNRRQAALDGFRDGTYQIMVATDIAA
RGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTGEDEQMVRSIERVLGA
KIERRRVEGFDYTVPAPKKDEEFARPPREPQRRKQAAPAAGKPAEAKSAPAGGRPSQPGN
SRGPGASRGPGGNRHQSGQRQGGNRPAGQGAGEGQRGGAQRPGNHAARRSGR
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
gtggaattcaaacagtttaacttgcaccccaaggtccaggcaggcgtagaggccgtgggg
taccagacccccacccccatccagttgcaggccattccggcggtgatcgccggtcaggac
gtgctcgggctggcccagaccggcaccggcaagaccgccgccttcggcctccccatgctg
caccgactggtggagggacaccgcggcaaggtgcgcggcctcgtgctcgcccccacccgc
gagctcgccgagcagatcaacgaatcgctcaacgcgctggcgcagcagacccgcctgaaa
agcatcaccgtctacggcggcgtcaacatcaacacccagatcaagaagctcaaggaaggg
accgacatcgtggtcgcctgcccggggcgccttctggaccacatctcccaggggaccgtc
gatctctccggcgtcgaggtgctggtgctggacgaagcggaccagatgttcgacatgggc
tttctccccgacgtgaggaagatcctgcgcgcgcttcccggcaagcggcagaacctcatg
ttctccgccaccatgcccgacgacatccgccggctggcgcacgagatcctgtgccgcccg
gtgacggtgcaggtgagccgcaccgcccctgccgccaccgtctcccacgcgctctacccg
gtggggcagcacctgaagaccccgcttctcttcgagcttttgaagcacaccgacaccgag
agcgtgctcatcttcaccaagaccaagtaccgcgccaagaggctcggcgagcagttggag
aagagcggctacaaggcgaccagcctgcaggggaacctgtcgcaaaaccgcaggcaggcg
gccctggacggctttagggacggcacctaccagatcatggtggccaccgatatcgccgcc
cgcggcatcgacgtctccctgatctcgcacgtcatcaactacgacatccccgacaccccc
gaggcgtacacgcaccggatcggccgcaccggccgcgccgccaagaccggcgatgccttc
accatggtgaccggcgaagacgagcagatggtgcgcagcatcgagcgcgtgttgggcgcg
aagatcgagcggcgccgcgtggaaggttttgactacaccgtgccggcgcccaagaaggac
gaggagttcgcccgtccgccgcgtgagccgcagagaaggaagcaggccgctccggctgcg
ggcaagcccgccgaggccaagagcgctcccgccgggggaaggccgtcccagcccggcaac
agccgtggtcccggcgcatcccgcggtcccggcggcaaccgtcaccagtccggtcagcgc
cagggtggtaaccgtcccgccggccagggcgccggtgaagggcagcgcggcggtgcgcag
cgtcccggcaatcacgccgcccgccgtagcggcaggtag
DBGET
integrated database retrieval system
