Geomonas paludis: M1B72_20055
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Entry
M1B72_20055 CDS
T08160
Name
(GenBank) deoxyribonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
gpl
Geomonas paludis
Pathway
gpl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
M1B72_20055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpl03400
]
M1B72_20055
Enzymes [BR:
gpl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
M1B72_20055
DNA repair and recombination proteins [BR:
gpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
M1B72_20055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
UPU35707
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All DBs
Position
4685995..4686846
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AA seq
283 aa
AA seq
DB search
MDLLGAHVSISGGIHNAVDRGVASGCGVIQVFTQNSNQWRGKAISDADAKLFRDKFAASG
MKSVMSHDIYLINLAAAPGDVKDKSLIAFREELERCAKLGIDKVVMHPGSHNGDGEEVGI
RRVCEAFDQLFGEVPQFTGKVLLENTAGQGSNLGYKFEHLKAIVTGCSDPTRFGVCFDTC
HAFASGYPIADHDGYRRTFDEFDALLGIDRLMAFHLNDSKKGLGCKVDRHEHIGAGTLGL
EPFRFILNDPHFALVPKVIETPKGDEDEMDAVNLKLLRSLIEG
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atggatcttctgggcgcgcacgtctccatttcgggagggatccacaacgccgtcgaccgc
ggggtcgcctccggctgcggtgtcatccaggtcttcacccagaactcgaaccagtggcgc
ggcaaggcgatttccgacgccgacgccaagctgttccgggacaagttcgcggccagcggc
atgaagagcgtcatgagccatgacatctacctgatcaacctggcagcagcccccggcgac
gtgaaggacaagagcctgatcgccttccgggaggaactggagcgctgcgccaagctgggc
atcgacaaggtggtcatgcacccgggctcgcacaacggcgacggcgaggaggtcggcatc
cggcgcgtctgcgaggccttcgaccagctcttcggcgaggtgccgcagttcaccggcaag
gtgctgctggaaaacaccgccggccaggggagcaacctgggctacaagttcgagcacctg
aaggcgatcgtgaccggctgctccgacccgacccgcttcggcgtctgcttcgacacctgc
cacgccttcgcctccggctatcccattgccgaccacgacggctaccgcaggaccttcgac
gaattcgacgccctgctcggcatcgaccggctgatggccttccacttgaacgactccaag
aaggggctcggctgcaaggtggaccgccacgagcacatcggcgccggcacgctcgggctg
gagcccttccgcttcatcctgaacgacccgcacttcgccctggtccccaaggtgatcgaa
acgcccaaaggggacgaggacgagatggacgcggtgaacctgaaacttttgcggagcctg
atcgaaggctga
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