Geomonas paludis: M1B72_20120
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Entry
M1B72_20120 CDS
T08160
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
gpl
Geomonas paludis
Pathway
gpl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
M1B72_20120 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpl03400
]
M1B72_20120 (recB)
Enzymes [BR:
gpl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
M1B72_20120 (recB)
DNA repair and recombination proteins [BR:
gpl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
M1B72_20120 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
ResIII
AAA_11
AAA_30
DEAD
AAA_25
Motif
Other DBs
NCBI-ProteinID:
UPU35720
LinkDB
All DBs
Position
4700811..4704188
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AA seq
1125 aa
AA seq
DB search
MKKFDLLHTPLGGRNLIEASAGTGKTFTIAGVYLRLVLEEELDVSRILVVTFTEAATKEL
KERIRQKLKDAETSFETGQSDDFLVTGLMERSTDRDKARRLLANAVRSFDEAAIFTIHGF
CQRMLQDNPFESGSLCDTELLTDQAKILNEIAQDYWRINCYGEPVERISAADHAKVTPDS
LLKLAKRVCSDPYATVVPDAPAATEDEADWLLALKRNFFDYLRAELPKRKRLKNVRCFDD
LLGDLHAALTRPGSPLPRLIRERFKAALIDEFQDTDPVQFAIFDAIYPVGYEAPFFLIGD
PKQAIYSFRGADIFAYLGAADATKQRHTLLQNFRSEPGLITAVNKLFTSRELPFLHEKIG
FNEVEAAPKERSILTEQGERKAPLKFWFAPRKEAGKPINKGEAWDLLPETVASEIARILR
DGAAGNLTVEELRQEDDDERWVQRPVRPRDVAVLVRANRQARLMQQALSRRGIPSVLCSA
GNLFETDEAAELLRLLSAVAQPGHEALLRGALATDLVGVTGPELAQLVHDEDKWEEILEE
FRGYHDTWNAASCMAMALQFLERRKVRQRLLSGPMGERRLTNVLHAIEVIHQAQVKERLG
MEGVVTWLSCRITEEPKKEEYEVRLETDEAAVQLVTIHKSKGLEYPIVFLPFCWAEVGGK
DEGALFHDDHGKVVLDIGSEDMEQSKAKAAQEALAESLRLLYVALTRGKHRTYVVWGAFK
DAADSSLHYLLHPDQDEVKGQVKLSDEKICERLAELAAASAGSIEALEMPAADLLGFRAG
AEDVPALAPQHFTGTIARDWRVASFTSLSSRQHHTAELPDRDETTPVEESPVRDVEPTGI
FAFPKGAKAGIFLHKIFEDLDFTEAQQQLAPLVEEQLDKHGFAAEWSSAVRDMVLNVLQA
PLGDKAISLAQVPLERRLTELEFFFPLAQVTSDGLKDAVTRFMGKHGADAAFPVDMAELF
SRLSFSPVRGMLLGFIDLVFERDGRYYIVDWKSNHLGNSAADYGQAALKREMEASFYPLQ
YLLYTVALDNYLRLRIEGYDYDRHFGGIFYLFLRGIDGTGNGVFADRPHKEFIAELAGVL
LPESVRLAHEAPPSPQPSPKGRGGAGKKSKKNGADDQLSFDLALE
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaattcgacctcctacataccccgctgggcgggcgcaacctgatcgaggcgagt
gccgggaccggcaagaccttcaccatcgccggcgtctacctgcgcctggtgctcgaggaa
gagctcgacgtgtcgcgcatccttgtggtcaccttcaccgaggccgccaccaaggagctc
aaggagcgcatccggcagaaactgaaggacgcggaaacctcctttgaaacgggacagagc
gacgacttcctggtgacggggctcatggagcgcagcaccgaccgcgacaaggcgcggcgt
ctgctcgccaacgcggtgcgcagcttcgacgaggccgccatcttcaccatccacgggttc
tgccagaggatgctgcaggacaaccccttcgagagcggctccctgtgcgacaccgaactg
ctgaccgaccaggcgaagatcctcaacgagatcgcccaggactactggcgcatcaactgc
tacggcgagcccgtcgagaggatctcggcggccgaccacgccaaggtcacgccggattcc
ctgctcaagctggccaagagggtctgcagcgatccctacgccaccgtcgtccccgatgct
cccgccgcaaccgaggacgaggcagactggctgctggcgctcaagcggaacttcttcgac
tacctgcgcgccgaactccccaagcggaagcggctcaagaacgtgcgctgcttcgacgac
ctcctgggcgacctccacgccgccctgacccgccccggctccccgctgccacggctgatc
cgcgagcgcttcaaggcggccctgatcgacgagttccaggacaccgacccggtccagttc
gccattttcgacgccatctatcccgtcgggtacgaggcccccttcttcctgatcggcgac
cccaagcaggccatctacagcttccgcggcgccgacatcttcgcctacctgggagctgcc
gatgcgaccaagcagcgccacaccctgttgcagaacttccgttccgagcctggattgatc
acggcggtgaacaagctcttcacctcgcgcgagctcccgttcctgcacgagaagatcggc
ttcaatgaggtcgaggcggcgccgaaggagcgcagcatcctcaccgaacagggtgagcgg
aaagcgccgctcaagttctggttcgccccgcgcaaggaagcaggcaagccgatcaacaag
ggggaggcgtgggacctgctcccggaaacggtagcctccgagatcgcccgcatcctgcgt
gacggcgcggcggggaaccttacggtggaggagctcaggcaggaggacgacgacgagcgc
tgggtgcagcggccggtccggccgcgcgacgtggcggtcctggtgcgcgccaaccggcag
gccaggctgatgcagcaggccttgagccgcagggggatcccgagcgtcctctgcagcgcg
ggaaacctgttcgaaaccgacgaagcggcggagctgctgcggctcctctcggcggtagcc
cagccgggacacgaagcgctcctgcgcggtgcgctcgccaccgacctggtcggagtcacc
ggcccggaactggcgcaactggtccacgacgaggacaagtgggaggaaatcctggaggaa
ttccggggctaccatgacacctggaacgcggcctcctgcatggcgatggcgctgcagttc
ctggagcggcgcaaggtgcggcagcggctgctctccgggccgatgggcgagcggcgcctg
accaacgtgctgcacgccatagaggtcatccaccaggcccaggtcaaggaacggctcggg
atggagggggtggtgacctggctctcctgccgcatcaccgaagaacccaagaaagaggag
tacgaggtccgcctggagaccgacgaggccgcggtccagttggtgaccattcacaagagc
aaggggctcgagtaccccatcgtcttcctccccttctgctgggccgaggtcggcggcaag
gacgagggggcgctcttccacgatgaccacggcaaggtggtgctcgacatcggctccgag
gatatggagcagagcaaggccaaagcggcccaggaggcgctcgccgagagcctgaggctc
ctgtacgtcgcgctcacccgcggcaagcaccgcacctacgtcgtctggggcgctttcaag
gacgccgccgacagttcactgcactacctgctgcacccggaccaggacgaggtgaagggg
caggtgaagctatccgacgagaagatctgtgagcgcctggctgaattggcagccgcttcc
gccgggagcatcgaggcactcgagatgcccgccgccgacctgctcgggttccgggccggt
gcagaggacgtgcccgcactggcgccgcagcacttcaccgggaccatcgcccgtgactgg
cgcgtcgccagcttcacctccctttccagccgccagcatcacactgccgaacttcccgac
cgcgacgaaacaactccggtcgaggaaagcccggtgcgcgacgtggaaccgaccggcatc
tttgccttccccaagggggccaaggccggtatcttcctgcacaagatcttcgaggacctc
gacttcactgaagcccaacagcaactggcgccgctggtcgaggagcagttggacaagcac
ggctttgccgccgaatggagtagcgccgtgcgcgacatggtgctgaacgtgctgcaggcg
ccgctgggggataaggcgatcagcctggcgcaagtgccgctggagcggcgtctgaccgag
ctggaattcttcttcccgctggcccaggtcacctccgacgggctcaaggacgccgtcacc
cgcttcatggggaaacacggagcggacgcggcgttcccggtggacatggccgaactgttc
agccgtctctccttctcaccggtgcgggggatgcttttgggtttcatcgacctcgtgttc
gagcgcgacgggcgttactacatcgtggactggaagtccaaccacctcggcaacagtgcc
gcggattacgggcaggccgcgctgaagcgggagatggaggcaagcttctacccgctgcag
tacctcctctacacggtggcgctcgacaactacctgaggctgcgcatcgagggttacgac
tacgaccgccatttcggcgggatcttctacctgttcctgcgtggcatcgacggcaccggc
aacggcgtcttcgctgaccggccgcacaaggagttcatcgccgaactggccggagtgctg
ctgccggaatcggtacgactggcgcatgaagcacctccctcaccccagccctctcccaaa
gggcgagggggagccggcaagaagtcgaaaaagaatggtgccgacgatcaactaagtttt
gatctggctttagagtaa
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