Geomonas paludis: M1B72_20765
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Entry
M1B72_20765 CDS
T08160
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
gpl
Geomonas paludis
Brite
KEGG Orthology (KO) [BR:
gpl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gpl03016
]
M1B72_20765
Enzymes [BR:
gpl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
M1B72_20765
Transfer RNA biogenesis [BR:
gpl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
M1B72_20765
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
UPU35843
LinkDB
All DBs
Position
complement(4868129..4869262)
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AA seq
377 aa
AA seq
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MQNKNKATNPAAAHLVTDQKTLDELVARLSKESVLAFDLEADSLHHYTEKVCLIQVSSPS
ETRLIDPLAPIDVRALAPIFANPAIKKIFHGADYDMRSLYRDFGIEVVNLFDTMIASQFL
GESEFGLAALLKKRFGVELDKRYQKADWSKRPFSQEMLEYAMKDTSLLIELYRQLEAELV
AKGRLAWVEEESELVAGVRSPSREGELMCLRFKGANKMKPRELAVLEELLKFRDEKARIA
DVPPFRILSNDLLRELAEKQPRSNFELVGIHTMSSKLIERLGRGLLQAIANGLALPQDKL
PQVQASRRPVLDRLQDEKVKRLKIWREAKSAQLGLGVGLVANNTLLEALAEPGSSQNALL
KRWQREAFGDELAALIS
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
ttgcagaacaagaataaagcaacaaatcccgcagcggcacatctcgttaccgaccaaaag
accctggatgaactcgtagcgcggctctcgaaggagtcggtgcttgccttcgacctggaa
gccgactcgctgcaccactataccgagaaggtctgcctgatccaggtctcctcgccgtcg
gagacgcgcctgatcgatccgctggcccccatcgacgtgcgtgcgctggcgccgatcttc
gccaacccggccatcaagaagatcttccacggcgcggactacgacatgcgttcgctgtac
cgcgacttcggcatcgaggtggtcaacctcttcgacaccatgatcgccagccagttcctg
ggcgagagcgagttcggcctggcggcgctcttgaagaagcgcttcggcgtcgaactggac
aagcgctaccagaaggcggattggagcaagcgccccttctcccaggagatgctggagtac
gccatgaaggacacctctctcttgatcgagctgtaccgtcagctcgaggccgagttggtg
gctaaggggcgtctggcctgggtggaggaggaatccgagctggtggcgggggtgagatcg
ccgtcacgcgagggcgagctcatgtgcctgcgcttcaagggcgccaacaagatgaagccg
cgcgagctggccgtcctcgaggaactgctcaagttccgtgacgagaaggcgcgcatcgcc
gacgtcccccccttccggatcctcagtaacgacctgttgcgcgagctcgccgagaagcag
cccaggagcaacttcgagctggtcggcatccacaccatgtcgtccaagctgatcgagcgg
ctggggcgcgggctgctgcaggcgatcgccaacgggctggccctgccgcaggacaagctg
ccgcaggtgcaggcaagccgccgtccggtgctggaccggctccaggacgagaaggtgaag
cggctcaagatctggcgcgaggcgaagtcggcccagctcggcctgggtgtcgggctggtg
gccaacaacacgctcctggaggcgcttgccgagccgggttcctcgcagaacgcgctcttg
aagcgctggcagcgcgaggcgttcggcgacgagttggccgcactgatctcctga
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