Geomonas paludis: M1B72_21350
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Entry
M1B72_21350 CDS
T08160
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gpl
Geomonas paludis
Pathway
gpl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M1B72_21350 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpl03400
]
M1B72_21350 (mfd)
Enzymes [BR:
gpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M1B72_21350 (mfd)
DNA repair and recombination proteins [BR:
gpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M1B72_21350 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
UB2H
AAA_22
ERCC3_RAD25_C
AAA_30
SecA_DEAD
AAA_25
Motif
Other DBs
NCBI-ProteinID:
UPU35955
LinkDB
All DBs
Position
5051286..5054759
Genome browser
AA seq
1157 aa
AA seq
DB search
MTMPEAQYLKQLNEKLTSPTCQVSVTGLEGAAPAFLLSRLADNGAPPLVVLTADQESADE
IARELRFFTARPESVLPFPAWDVTPFDAASPHPDLVGERLNALVRLLDGAARAVVLPVAS
ALQRVIPRDTLGGVCQYLVAGEELERDGLVEKLVKLGYSHVPLVEDRGTFSVRGGILDIF
PPDREQPIRIEFFGDEVETMRLFDPVSQRSLEPLEELVLLPSREVILSEQVVKDLAPRLK
RRCDHLGIGADRRRELLEQLQHAIYPPGVEFLQPLFHPHLETVLDYVGEGAIRVLVDPAA
IADALQRFGEDLDSAFKRAELRDAIVCDPAELYLSAQELERSLSAGRRLEFPRLEIEGEG
GEKLRVACAGNQDLRLDTNPEGERVLAPLTEKLVTWIAAGNRVLIPCHQAGQARRLYELL
SHYRLPLEHSQDSFLSAAARPAGRVEILIGEISRGFRLEEERLVVIAEEEIFGKRVKRRG
LSEAKKKQLLTSLAELKPGDHMVHIDFGVALYRGLQHLSLTGMEGDFLLLEYAGGDKLYL
PVDRINLVQRYVGAEGIEPRLDRLGGAGWEKAKAKARAEIQEMAAELLKIHAAREVQEGY
RYSPADDMYRAFEASFAFEETPDQAAAIDQVIADMESPRPMDRLVCGDVGYGKTEVAMRA
AFKATLDGKQVAILVPTTVLAQQHAESFAARLKDYPVRVEMLSRFRTPQQQKQILDGVKK
GEVDIVIGTHRLLQKDVVFKDLGLLIVDEEQRFGVAHKERLKQFRAVVDILTLTATPIPR
TLYMSLMGIRDLSIIDTPPVDRLAIKTFVSRSSDELIREAVLRELRRGGQVFFVHNRVQS
IGAMAEELRRIVPEAKIAVGHGQMAEKELEQVMLSFMHGEANLLLCTTIIESGLDIPTAN
TLIVNRADTFGLSQLYQLRGRVGRSKTRAYAYLLIPGEGSISSDARERLKIIQELTELGA
GFRIATHDLEIRGAGDLLGARQSGDIAAVGFELYTELLDEAVRTLKGEALPERVEPEIKL
KVPAFIPEDYVRDPNQRLLIYKKLTQPADEAEVDDIREELADRFGPLPVAALYLLEVMRL
RVALKRLLVKEIEYSGNELSLAFHERTPVSPDAITGLLRKEKGKYRFTPDFRLYVRVGDG
SFDGVLAEARNVLKCLV
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgcccgaagcgcagtatctgaaacagctcaacgagaaactgacctcccccacc
tgccaggtgagcgtgaccgggctggagggggcggcgccggctttccttttgtcgcggctg
gccgacaacggcgcgccgccgctggtggtgctgaccgccgaccaggagagcgccgacgag
atcgcccgcgagctgcgcttcttcaccgcccgcccggagagcgtgctccccttccccgcc
tgggacgtcacccccttcgatgccgcctcgccgcacccggacctggtcggagagcgactg
aacgccctggtccgccttctggacggcgcggcccgggcggtagtgctcccggtggcgagc
gccctgcagcgggtcatcccgcgcgacaccctgggcggggtctgccagtatctcgtcgcc
ggcgaggagctggagcgcgacggcctggtggagaaactggtcaagctggggtactcccac
gtccccctggtcgaggaccgcggtaccttctcggtacgcggcgggatactggacatcttc
ccccccgaccgggagcagccgatccgcatcgagttcttcggcgacgaggtcgagaccatg
cgtctcttcgatccggtctcgcagcgctccctggagccgctcgaagaactggtgctgctc
ccctcgcgcgaggtgatcctttccgagcaggtggtgaaggacctcgcccccaggctcaag
cgccgctgcgatcacctgggcatcggcgccgaccggcgccgcgaacttctcgagcagctg
cagcatgccatctacccgccgggcgtcgagttcctgcagcccctgttccacccgcacctg
gagaccgtcctcgactacgtgggcgagggggccatccgggtcctggtcgacccagcggcc
atagccgatgcgctgcagcgcttcggggaagacctggacagcgccttcaagcgcgccgag
ttgcgcgacgccatcgtctgcgaccccgccgaactctacctctcggcgcaggagctggag
cgctccctctccgccgggcgccggctcgagttcccgcgcctggagatcgagggggaaggg
ggcgagaagctcagggtcgcctgtgccggcaatcaggacctgagactggacaccaacccg
gaaggggagcgggtgctggcccccctcaccgagaaactggtgacctggatcgcggccggc
aaccgcgtgctgatcccctgccaccaggccgggcaggcccgcaggctctacgaactcttg
tcccactaccgcctccccctggagcactcccaggactcgttccttagcgccgcggcgcgc
cccgccggccgggtcgagatcctgatcggcgagatatcgcgcggcttccgcctggaagaa
gagcgcctggtggtcatcgccgaggaggagatcttcggcaagagggtgaagcggcgcggc
ctctccgaggcgaaaaagaagcagctgctcacctcgctggcggagctgaagccgggcgac
cacatggtgcacatcgacttcggcgtggcgctgtaccgcgggctgcagcacctgagcctc
accggcatggaaggggacttcctgctcctcgagtacgccggcggcgacaagctctacctc
ccggtggaccgcatcaacctggtgcagcgctacgtgggcgccgaggggatcgagccgcgg
ctggaccggctggggggcgccggctgggaaaaggccaaggccaaggcccgcgccgagatc
caggagatggcggcggaactgttgaagatccacgccgcccgcgaggtccaggaagggtac
cgctactccccggccgacgacatgtaccgcgccttcgaggcctccttcgccttcgaggag
accccggaccaggccgccgccatcgaccaggtcatcgccgacatggagagcccgcgcccc
atggaccgcctggtctgcggcgacgtcggctacggcaagaccgaggtggccatgcgcgcc
gccttcaaggcgaccctggacggcaagcaggtggccatcctggtgccgaccaccgtgctc
gcccagcagcatgccgagagcttcgcggcaaggctcaaggattacccggtgcgggtggag
atgctgtcgcgctttcgcaccccgcagcagcagaagcagatcctggatggggtgaagaag
ggggaggtcgacatcgtcatcggcacccatcgcctgttgcaaaaagacgtggtcttcaag
gacctggggcttctgatcgtggacgaggagcagcgcttcggcgtggcccacaaggagcgg
ctcaagcagttccgggccgtggtggacatcctcaccctgaccgcgaccccgatcccgcgc
accctgtacatgtcgctcatggggatccgggacctctccatcatcgacaccccgccggtg
gaccggctcgccatcaagaccttcgtctcccgctcctcggacgagctgatccgggaggcg
gtgctcagggagctcaggcgcggcggccaggtcttcttcgtgcacaaccgggtgcagagt
atcggcgccatggccgaggagttgcgccgcatcgtccccgaggcgaagatcgccgtgggg
cacgggcagatggcggagaaggaactggagcaggtgatgctctccttcatgcacggcgag
gcgaacctcctcctgtgcaccaccatcatcgagagcggcctggacatccccaccgccaac
acgctcatcgtgaaccgcgccgacaccttcggcctgtcccagctctaccagctgcgcggc
agggtcgggcgctccaagacccgcgcctacgcctacctgctcatcccgggggaaggctcc
atctcctccgacgcgcgcgagcgactgaagatcatccaggagttgaccgaactgggggcg
ggcttcaggatcgccacccacgacctggagatccgcggcgccggcgacctgttgggggcg
cgccagagcggcgacatcgcggcggtcggcttcgagctctacaccgaactcttggacgag
gcggtgcggacgctgaagggagaggcgctcccggagcgggtggagccggagatcaagctc
aaggtgcccgccttcatcccggaggactacgtccgcgacccgaaccagcgcctgctcatc
tacaagaagctgacccagcccgccgacgaggccgaggtcgacgacatccgcgaggaactg
gcggaccgcttcgggccgctgccggtcgcggcgctctacctcctggaggtgatgcgcctg
cgcgtggccctgaaacggctcctggtgaaggagatcgagtactccggcaacgagctctcg
ctcgccttccacgagaggacgccggtctcgccggatgccatcaccggactgttgcgaaaa
gagaaaggaaaatacaggtttacgccggacttccggctttacgtgcgggtcggcgacggc
tcgttcgacggggtgctggcggaagccagaaatgtcttgaaatgcctagtctga
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