Geomonas paludis: M1B72_21695
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Entry
M1B72_21695 CDS
T08160
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gpl
Geomonas paludis
Pathway
gpl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
M1B72_21695 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpl03400
]
M1B72_21695 (ligD)
Enzymes [BR:
gpl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
M1B72_21695 (ligD)
DNA repair and recombination proteins [BR:
gpl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
M1B72_21695 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UPU36018
LinkDB
All DBs
Position
5125208..5127958
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AA seq
916 aa
AA seq
DB search
MGLEEYQRKRDLSKTPEPWGKGGRSTRALRFVVHKHAASHLHYDFRLEIDGVLKSWAIPK
GPSLDPAVKRLAMMVEDHPYEYGDFEGVIPKGNYGAGEVIIWDTGTFHAAGSEEPEQSLK
LLREGLQKGDLKFVLHGEKLNGEFALVRIKGDKGNSWLLIKKKDRYAGSEDVTLQERSVV
SNVTIEDLRAGRMPQRRPVQAEGGVAATPASPHPPSPLQGEEQASAPPPPPAKFANTTPP
TTALPPTNTTNTTNTTNPTSSSGSTASTWSTGSTRSTVSAGTPMLATSAAEPFDDPDWLF
EIKLDGYRTIAEVSGRDVALYSRNNLPFNKKFPSIVTALAALGVDAVFDGEVVVVDETGR
SYFQLLQNYQRTGRGNIAYYVFDLLYLNGEDLRNQPLLARKERLRALLPDLPEIRYSDHI
IESGKEFFELARQNNLEGILAKRAASLYQSGKRSKEWLKIKVRFQQEAVICGFTQPRRSR
KGLGALVLGVYEDDRLVCIGFAGGGFDDAGLKEMYDLLQPLVQDNSPFQQPVKSDMPITW
VRPELVCEVEFSEWTDENVMRQPIYLGLREDKDPKSVVRELVGSTPPPPPEPAASPSPPS
LPKGSGSRKGSSSKKGQEEVLILDGHRLELSNLDKVFWPDQGYTKGDVINYYRTMAHAML
PHLVDRPESLYRTPNGIAEPGFFQKEAGELPPSWITTREIYSKHVDKNIKFFVCQDEATL
VYMANLGCIEINPWLSRLQNLDYPDYFVIDLDPEDIPFAKVIETALAVREVLERAGAVSF
PKTSGATGIHIYVPLGAKYDYDAAGEFARVIATLVHHRVPEFTSILRSPKLRQKKVYLDF
LQNKPGQTLAAPYSIRPRPGATVSAPLKWEEVQPGLDPSQFTITTMPRRLEHLGDLFAGV
LGPGIDLEQCIENLER
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgggactggaggagtatcagcgcaaacgggatctgagcaaaacgcctgaaccatgggga
aaaggggggcggtcgacgcgggcgctgcgtttcgtcgtccacaagcatgccgcctcccac
ctgcactacgattttcgcctggagatcgacggggtgctcaagagttgggcgatacccaag
gggccgtcgttggatccggcagtgaagcggctggccatgatggtggaggaccatccgtac
gagtacggcgatttcgagggcgtgattccgaaagggaactacggcgccggcgaggtgatc
atctgggataccggcaccttccacgccgcggggagcgaggaaccggagcagagtctgaag
cttttgcgcgaggggttgcagaagggcgacctgaagttcgttctgcacggcgagaagctg
aatggcgagttcgccctggtgcgcatcaagggcgacaaggggaattcgtggctcttgatc
aagaaaaaggaccggtatgccggcagtgaggacgtgaccctgcaggagcgttccgtggtg
agcaacgtcaccatcgaggacctccgtgccggccgtatgccgcagcgccggccggtgcag
gccgaaggcggtgtggccgctacgcccgcttccccccacccgccctcccccctccagggg
gaggagcaagccagcgcccccccaccaccgcccgcaaagttcgccaacaccaccccgccg
acaaccgcgctcccccccaccaacaccaccaacaccaccaacaccaccaaccccaccagc
tcttccgggtccactgcgtccacctggtccaccgggtccaccaggtccacggtgtcagcc
ggcacccccatgctggccacctccgccgccgagcccttcgacgacccggactggctcttc
gagatcaagctggacggctaccgcaccatcgccgaggtttccggccgggacgtcgccctc
tactcgcgcaacaacctccccttcaacaagaagtttcccagcatcgtcacggcgctggcc
gcgctcggcgtcgatgccgtcttcgacggcgaggtggtggttgtcgatgaaaccggccgc
tcctactttcaactgctgcagaactaccagcgcaccggccgcggcaacatcgcctactac
gtcttcgacctgctctacctgaacggcgaagacctgcgcaaccagcctctcttggcccgc
aaggagaggctgcgcgccctgctgcccgacctccccgagatccgctacagcgaccacatc
attgagtccggcaaggagttcttcgaactggcgcgccagaacaacctggaagggatcctg
gccaagcgcgccgcgagcctgtaccagtccgggaagagaagcaaggagtggttgaaaatc
aaggtgcgcttccagcaggaggcggtcatctgcggcttcacccagccgcgccgcagccgg
aaagggctgggggcgctggtgctcggcgtctacgaggatgaccgcttggtctgcatcggc
ttcgccggcggaggctttgacgacgccggcctcaaggagatgtacgacctgctgcagccg
ctggtgcaggacaactccccctttcagcagccggtgaagtccgacatgccgattacctgg
gtaaggccggaactggtctgcgaggtggagttttccgagtggaccgacgagaacgtgatg
cgccagcccatctacctgggattgagggaggacaaggacccgaagagcgtggtgcgcgaa
ctggtcggttccacgccgcccccgccgccggagcccgccgcgtccccgtcgcccccttca
cttccaaagggttccggcagcaggaagggttcgagtagcaagaaaggacaggaggaagtc
ctcatcctggacggccaccggctggagctttccaacctggacaaggtgttctggccggac
caggggtacaccaagggagatgtcatcaactactaccgcaccatggcccacgccatgctc
ccccacctggtcgaccggccggagtccctgtaccgcacccccaacggcatcgccgagccg
ggctttttccagaaggaagcgggcgagctgccgccatcctggatcaccacccgggagatc
tactccaagcacgtggacaagaacatcaagttcttcgtgtgccaggacgaggcgaccctg
gtctacatggccaacctcggctgcatcgagatcaacccctggctgtcgcgcctgcagaac
ctcgactaccctgactacttcgtgatcgacctcgacccggaggacatcccgttcgccaag
gtgatcgagacggcgctggcggtccgggaggtgctggagcgggccggcgcggtcagcttc
cccaagacctccggcgccaccgggatccatatctacgtgccgctgggggccaagtacgac
tacgacgccgcgggcgagttcgcccgggtcatcgccaccctcgtgcaccacagggtcccg
gagttcaccagcatcctgcgcagcccgaagctgcgccagaaaaaggtctacctcgatttc
ctgcagaacaagccgggccagaccctggccgcaccctacagcatccgccccaggccgggg
gccacggtctcagccccgcttaaatgggaggaggtgcagccgggtctcgatccgagtcag
ttcaccatcaccaccatgcctcggcggctggaacacctgggcgacctgttcgccggcgtg
ctggggccgggaatcgacctggagcagtgcatcgagaacctggagcggtga
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