KEGG   Gallaecimonas pentaromativorans: AAHF08_19545
Entry
AAHF08_19545      CDS       T11943                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
gpm  Gallaecimonas pentaromativorans
Pathway
gpm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gpm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AAHF08_19545 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gpm03021]
    AAHF08_19545 (rho)
   03019 Messenger RNA biogenesis [BR:gpm03019]
    AAHF08_19545 (rho)
Transcription machinery [BR:gpm03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     AAHF08_19545 (rho)
Messenger RNA biogenesis [BR:gpm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AAHF08_19545 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB NACHT S1CSD-TOTE-2 AAA_25 Fungal_virus_P2_C AAA_22 AAA
Other DBs
NCBI-ProteinID: XXN22107
LinkDB
Position
4156533..4157798
AA seq 421 aa
MNLTELKNTPVSELVALADQMNLENMARARKQDIIFAILKAHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNDVN
FDRPENSRNKILFENLTPLHANSRMRMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTILLQNIAQSITYNHPEATLIVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHKPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDF
NRSGTRREELLCRDDELQKMWILRKILHPMDEISAMEFLIDKLSMTKTNDEFFEAMKRTK
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatcttaccgagttaaagaatacaccagtctcggaactggttgccctggccgaccag
atgaacctggaaaacatggcgcgggcccgcaaacaagatattatctttgcgatcctcaaa
gcccacgcgaaatccggcgaagacattttcggtgacggcgtactggagatcctgcaggac
ggttttggtttcctgcgtagcgccgattcctcctacttggccggccccgacgatatttat
gtctcgcccagccagatccgccgtttcaatctgcgcaccggcgataccatttccggtaag
attcggccaccgaaggaaggggaacgctattttgcccttctgaaagtcaacgacgtcaac
ttcgaccgccccgaaaactcccgcaacaagatcctcttcgaaaacctcacgcccctgcat
gccaacagccgcatgcgcatggagcgcggtaatggttctaccgaagacatcacggcgcgg
gtactggacttggcctcgcctattggtaaaggccagcgcggcctgattgtggcgccgccc
aaggccggtaaaaccatcctgttgcagaacattgcccagagcatcacctacaaccatccg
gaagccacccttatcgtgctgctcatcgacgagcgcccggaggaagtgaccgagatgcag
cgcctggtcaaaggcgaagtggttgcctctaccttcgacgaaccggccagccgccacgtg
caggttgccgagatggttatcgagaaggccaagcgtctggttgaacacaaaaaagacgtg
gtgatcctgctcgactccatcacccgtctggcccgtgcctacaacaccgtagtacccagc
tccggcaaggtactgaccggtggtgtggacgccaacgccctgcacaaacccaagcgcttc
ttcggtgcggcccgtaatgttgaggaaggcggcagcctgaccatcatcgccaccgccctg
attgataccggctccaaaatggacgaggttatctacgaagagttcaagggtaccggtaac
atggaactgcacctatcccgtaagattgccgagaaacgggtgttcccggctatcgacttc
aaccgttctggtacccgccgtgaagagctgctgtgccgtgatgacgagctgcagaagatg
tggatattgcgcaagatcctccatcctatggacgagatctccgccatggagttcctcatc
gacaagctgtcgatgaccaaaaccaacgacgagttcttcgaagcgatgaaacgcaccaag
agctaa

DBGET integrated database retrieval system