Gimesia panareensis: Pan110_10470
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Entry
Pan110_10470 CDS
T07079
Name
(GenBank) 2',5' RNA ligase family
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
gpn
Gimesia panareensis
Brite
KEGG Orthology (KO) [BR:
gpn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gpn03016
]
Pan110_10470
Enzymes [BR:
gpn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Pan110_10470
Transfer RNA biogenesis [BR:
gpn03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Pan110_10470
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
QDU48732
LinkDB
All DBs
Position
complement(1322840..1323424)
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AA seq
194 aa
AA seq
DB search
MQKNQRARTFIAVPVQPTKGLRKVLEKLEKMGSAVKPIPEDQMHITLKFLGPTELEDIMP
VSRILKEMRNQFKCVRLAFRGLGAFPREDRPNVIWAGVKDDTLLAEMVEYLEAETEKLGY
PRERKGFHAHLTLARIKAKPPEELFQLLSDRRDAEWGEVTLDTLKFYRSELKPQRAQYHE
MQTVRLPPAPKNKG
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaaaccaacgtgcccgtacttttattgccgtccctgttcaaccgactaagggg
ctgcggaaggtcctcgaaaaactggaaaagatgggttccgccgtcaagccgatcccggaa
gaccagatgcatatcacgcttaaattcctggggccgaccgagctggaagacatcatgccg
gtcagccgcattctgaaagagatgcggaaccagtttaaatgtgtccggctcgccttcaga
ggcctgggtgcttttccccgcgaagatcgaccgaatgtgatctgggcaggcgtgaaggat
gacacactgctggcggagatggtggaatacctggaagcagagacggagaagctgggctac
ccgcgggagcgcaaaggattccatgcccatctgacgctggcccgcatcaaagcgaagccg
cccgaagagctgtttcagctgctgtccgaccgccgcgatgcggagtggggtgaagtgacg
ctggataccctcaagttttaccgcagcgaactgaagccgcagcgagcccagtatcacgaa
atgcagaccgtgcgtctgcccccggctccgaagaacaagggttag
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