Gimesia panareensis: Pan110_12510
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Entry
Pan110_12510 CDS
T07079
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
gpn
Gimesia panareensis
Pathway
gpn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pan110_12510 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpn03019
]
Pan110_12510 (rnr)
03016 Transfer RNA biogenesis [BR:
gpn03016
]
Pan110_12510 (rnr)
Enzymes [BR:
gpn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Pan110_12510 (rnr)
Messenger RNA biogenesis [BR:
gpn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pan110_12510 (rnr)
Transfer RNA biogenesis [BR:
gpn03016
]
Prokaryotic type
tRNA degradation factors
Pan110_12510 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QDU48935
LinkDB
All DBs
Position
1610962..1613268
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AA seq
768 aa
AA seq
DB search
MPDFEKKILDYVTRPGYTPLREKALLKKVGGSKSTSSEFEQAMLSLQSRKEILVSDSGLI
RPVKKEGWIAGIIKKTSSGAGYLIPHHKPDDIAHDQRHAGDLYISERDMRDAQTGDEVYA
TVINRRRSGGQICGRVVEIIERASTTFVGTYFETQGEGYVHVDGKIFNSPIHVGDPGAKG
VEPEDKVVIDILHFPSKNYLGQGVISKVLGPHGKPGVDLLSIVFEFGIPMDFPDEVLEAA
REQASLFDETRLGNRRDLTDETIVTIDPADARDFDDAISLKQNERGHWVLGVHIADVAHF
VKEGSTLDREARRRGTSVYLPGRVIPMLPEVISNGLASLQEGQVRFTKSAFIEFTTDGVP
VHTEFVNSAIRVSKRFAYEQVLPIVQGRDEEGDRVSAEIRELLKNMHHLAMMLRKRRFAG
GALELHLSEVRLTFDDKHRVSGAVEREHDESHQIIEEFMLAANIAVAEGLNDRGLRFLRR
VHPSPDHQRQIEFAEFVNALGYTLKKAQSRKDLQRLVEQVHGTAVEQAINYSLLRSLKQA
EYTDEELGHYALAVEHYCHFTSPIRRYPDLTIHRLIDEILERPDKGKGQSPQGLRQLGHD
LSMRERRAESAERELTKVKLLTWMVDNKITTLKTMITGVESFGLFCRGVDVPVEGLLHIS
RLGKHDYFHQDAAKFSIVGERTGQEFRIGDFLTVEVDKIDLDRRELDFRLPRPEKSGKSK
SNSKSKSDQENSKRAGKKSSRASSKGKSAVKKKGRKVKSQRGKKKKRK
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgcctgattttgagaagaagattctcgattatgtcacccgccccggttacacacccctc
cgggaaaaagcgctgctgaaaaaggtgggaggttccaagtcgacttcttctgagtttgag
caggcgatgctgagcctgcagtcccgcaaagagattctggtttcggattccggtttgatt
cggcccgtgaaaaaagagggttggatcgcgggaattatcaagaaaaccagttccggggcc
ggttacctgattccgcatcataaaccggatgacattgcgcacgaccagcggcacgcgggg
gatctgtatatttccgagcgggatatgcgagatgcccagaccggtgacgaagtttacgcc
acggtcatcaatcgacgccgcagtgggggacagatctgcggacgggtggtggagatcatt
gagcgggcgtcgacgacatttgtcgggacctacttcgaaacgcagggcgaaggttatgtg
cacgtggatggcaagattttcaattcgcccatccacgttggggatcccggtgcgaagggg
gtggaacccgaagacaaggtcgtcatcgatattctgcatttcccctcgaagaactacctg
gggcagggagtgatttccaaagttctggggccgcacggtaagccgggcgtcgatctgctg
tcgatcgtttttgaattcggcattccgatggatttcccggatgaagttctggaagcagcc
cgcgaacaggccagcctgtttgatgagaccaggctgggaaatcgacgggatctaaccgac
gagacaatcgtgacgatcgaccccgcggatgcccgggacttcgacgatgcgatttcgctg
aagcagaatgaacgggggcactgggtcctcggtgtgcatattgcggatgtggcccatttt
gtcaaagaggggtcgacactcgatcgggaagcccgccgacggggaaccagcgtgtatctg
cccggcagggtgattccgatgctgccagaggttatttcgaacggcctggcgagtctgcag
gaagggcaggtgcggttcaccaagtcggcttttatcgaattcacaacggacggtgtgccc
gtacataccgagtttgtgaattccgcgattcgtgtttcgaagcggtttgcctatgagcag
gtgctgccgattgtccaggggcgtgatgaagagggtgaccgcgtctccgccgaaatacgt
gagctgctgaaaaacatgcatcatctggcgatgatgctgcggaagcgtcgctttgccggg
ggggcactggagctgcatctttccgaagtacggctcaccttcgacgacaagcatcgtgtg
agtggagccgtcgaaagggagcatgatgaaagccaccagatcatcgaggagttcatgctg
gcggcgaatatcgccgtggctgaggggctcaatgatcggggattgcggtttttacgtcga
gtgcatccctcacctgaccatcagcggcagattgaattcgccgagtttgtgaatgcactc
ggatacacactcaaaaaagcccagagtcggaaagatctgcagcggctggtcgagcaggta
cacgggactgctgttgagcaggcgatcaattattcactgctgcggagcctgaaacaggcg
gaatataccgatgaagagctggggcattatgcactggcggtagagcattactgccatttt
accagtccgattcgacgttatccggacctgacgattcatcggttgatcgatgagattctg
gagcgtcccgataaagggaaggggcagagtccgcagggactgcgtcagctggggcatgat
ctgtcgatgcgtgagcgtcgcgccgaatcagcggaacgcgagttgacgaaggtcaaactg
ttgacctggatggtcgacaataagattacgactctgaaaaccatgattacgggagtggag
tcgttcgggttgttctgccgcggggtggatgtaccggtcgaggggctgttgcatatcagc
cgattaggcaaacacgattactttcaccaggatgctgccaaattcagtattgttggcgaa
cgaaccgggcaggagtttcgcattggcgattttctgacagtggaagtagataaaattgat
ctggatcgcagagaactggattttcgtctgccccgcccggagaaatcagggaaatcaaaa
tcgaacagcaaatccaaatcggatcaagagaattcaaaacgtgcgggtaagaaatcgtct
cgcgcctcttccaagggaaaatcggctgtgaagaagaagggacgtaaagtgaagtcccag
cgcggtaagaaaaagaaacgcaagtag
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