Gimesia panareensis: Pan110_23660
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Entry
Pan110_23660 CDS
T07079
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gpn
Gimesia panareensis
Pathway
gpn03030
DNA replication
gpn03430
Mismatch repair
gpn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gpn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pan110_23660 (dnaE)
03430 Mismatch repair
Pan110_23660 (dnaE)
03440 Homologous recombination
Pan110_23660 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gpn03032
]
Pan110_23660 (dnaE)
03400 DNA repair and recombination proteins [BR:
gpn03400
]
Pan110_23660 (dnaE)
Enzymes [BR:
gpn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Pan110_23660 (dnaE)
DNA replication proteins [BR:
gpn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Pan110_23660 (dnaE)
DNA repair and recombination proteins [BR:
gpn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Pan110_23660 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
TRF
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QDU50024
LinkDB
All DBs
Position
complement(3176997..3180515)
Genome browser
AA seq
1172 aa
AA seq
DB search
MSDPRPFAHLHCHTHFSMLDGASRIPEMVSKIKEAGMNSLAITDHGNLYGAMDFYSQCRS
QEVNPILGLEAYIAPRSRFEKGASRMKEASFHLTLLAQNRQGFENLIKLSSMSYLEGFYY
KPRIDKEILEAHSDGLILLTGCAAGELSHHILGEDWEEAEKLCAWYEKVFGDRVYMEIQN
AGLEIQRQCMEGTVELANKMGLPLVATNDAHYVEQEDAVAQDVLLCVSTRSVVSDEKRMK
MTGDQFFVRTQEEMYNAFPGFEDAVARTQEVAERVDIQMSDKKFYPVFQPPDGMTDTQYL
RKLCEERLPLKYGDELSQAHWDRLNTELGVIEQMGYSSYFLIVWDFVVFAESEKIPCTAR
GSACGAMVAFLLGMSQVCPLKYDLLFERFLDPSRTEPPDIDIDFCRDRRQLVIDYTKKKY
GERSVAQIGTFGTLKAKAAIRDVGRALGVPLARVNEIAKMVPESLGIKLKDAIKESPDLQ
AAYDQDMEVKQLLDLAMQLEGLCRSAGTHAAGVVVADLPLSEVVPLQTITGKTDIITQWD
GPTVESVGLLKMDFLGLRNLTILDKAVQNVKKHCGIEINPHQLPLDDEETFALLQRGETK
GIFQLESGGMRDLLTKMKPDKFQDIIATSALYRPGPLEGGMVMQYVDVKHNRIPIPKVHP
IVDEILEETYGVMVYQEQVMRILNRVGGIELSAAYRCIKAISKKKLKIIAEFKDQYIAGA
KQRDMDEKLAVELFDMIEKFAGYGFNKSHSTAYGGVAYATAYLKAHYPKEFMAALLSCGM
ESHERINEHVDDCRRMKIEVLPPDINRSDVEFSVDGEKIRFGMGAIKGVGEQALEEVVKE
REENGPFTSLFNLCERVDPKSLNRSALEILIKAGALNSLGGNQAQLMLSVERAVQSALKI
HKDRARGQKSLFGDEPGNDEQGSADEALLPEAEDWSRAQKLAAEKEVFGFYLTSHPLAEM
GDSLTKYAQNKTNELAEMEDRDEVILAGMISSIKNAATKKPSKNGHTRYVNFDFEDPHGL
VRCIMWPEQYARFGEKVKMEAMVIIKGKIDKRGREPNVIVDQLLTLNDARKQFTDRLAIN
FKRGVHTRQDMVNVHDVLTQFPGQTEVILVVDSVDQEKPETSLRYVLNPPGNLRVSCSEE
FENRLKATIGESHIHFHTPVVKKKTINGSIGR
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacccacgcccttttgctcacctgcattgtcacactcatttcagcatgctggat
ggtgccagccgcatcccggaaatggtcagcaagatcaaagaagcgggcatgaattcgctg
gcgattacggaccacggcaacctgtatggagccatggacttttacagccagtgccgcagc
caggaagtcaatccgattctgggtctggaagcctatatcgccccccgcagccgcttcgaa
aagggggcctcgcggatgaaggaggccagctttcacctgacactgctggcacagaaccga
caggggttcgaaaacctgatcaaactctcatccatgtcttacctggaaggcttttattat
aagccgcgcatcgacaaggaaatcctggaagcccacagtgacggcctgattctgttaacc
ggctgtgcagcgggtgagttgtcgcaccacatcctgggggaagactgggaagaagcagaa
aaactgtgcgcctggtatgaaaaggtgttcggcgaccgcgtgtatatggaaatccagaac
gccggcctggaaattcaacggcagtgcatggaaggcaccgtcgaactcgctaacaaaatg
gggctccccctggtcgcaacgaatgatgcccattacgtcgaacaggaagacgcggttgcc
caagacgtgctgctctgcgtcagtacccgttcggtcgtctccgatgaaaaacggatgaaa
atgaccggcgatcagttttttgtccgcacgcaggaagaaatgtacaatgcgtttcccggc
ttcgaagatgcggtcgcccgcacccaggaagttgccgagcgggtcgacatccagatgtcg
gacaaaaaattctatcctgtctttcagccacccgatggaatgaccgacacgcagtacctg
cgtaagctgtgtgaagagcgcctgcccctgaaatatggtgatgaactgagccaggcgcat
tgggaccgtctgaataccgaactgggcgtcatcgagcagatgggctactccagttacttc
ctgatcgtgtgggactttgtcgtcttcgcggaaagtgaaaaaatcccgtgtacggcccgt
ggttctgcctgcggcgccatggtcgcttttctgctgggcatgtcgcaggtctgtccgctg
aaatacgacctgctgttcgaacggtttctcgacccgagtcgaaccgagccgcccgatatc
gatatcgacttctgccgcgaccgccgtcagctggtgatcgattacaccaagaaaaaatac
ggtgagcggagtgtggcccagatcggcacgttcggtaccttgaaagccaaagccgccatt
cgcgacgtgggacgtgcactgggtgtgccgctggcccgcgttaacgaaattgccaagatg
gttccggaatccctgggcatcaaactcaaggatgcgatcaaggaaagtcccgacctgcag
gccgcctacgatcaggatatggaagtcaaacaactcctcgacctggccatgcagctggaa
ggcctctgccgcagtgccgggacccacgctgcaggtgtggtggtagcagacctgcccctg
tcagaagtcgtcccgctgcagacgatcaccggcaaaaccgacatcatcactcagtgggac
ggccccaccgtggagtcggtcggcctgctcaagatggacttcctcggtctgcgcaacctg
accatcctggacaaagccgttcagaatgtgaagaaacattgcggcatcgaaatcaatccg
caccagttgccgctggatgacgaagagacctttgccctgctgcagcgcggcgagacgaag
ggaatcttccagctggaaagtggcgggatgcgtgacctgctgaccaagatgaagccggac
aagttccaggacatcatcgcgacttcagccctgtatcgcccgggccctctggaagggggg
atggtgatgcagtatgtcgatgtgaaacacaaccgaatcccgattcccaaagtgcatccg
atcgtggatgaaattctggaagagacctacggcgtgatggtctaccaggaacaggtgatg
cggattctgaaccgggtcgggggaattgagctctccgccgcgtatcgctgtattaaagcg
atcagtaagaaaaagctcaaaatcatcgccgagttcaaagaccagtacatcgccggtgcc
aaacagcgggacatggacgaaaagctggcggtcgaactctttgacatgatcgaaaaattc
gccggttacgggttcaacaaatcgcactcgaccgcctacggtggcgtcgcgtacgcgacc
gcatacctcaaggcgcattaccccaaagagttcatggcggctttgctctcctgcggtatg
gaaagccatgagcggatcaacgaacacgtcgacgactgccgtcgcatgaaaatcgaagtg
ctgccgccggacatcaaccgctccgatgtcgagttcagcgtggatggcgagaagatccgc
ttcggcatgggggcgatcaaaggcgtcggggagcaggccctggaagaggtggtcaaagag
cgcgaggaaaacggacctttcaccagcctgttcaatctctgtgaacgggttgaccccaaa
tcattgaaccgcagtgccctggaaattctgatcaaagcgggtgccctgaacagcctgggg
ggcaaccaggcgcagttgatgttgagcgtggaacgggctgtgcagtccgctctcaaaatt
cataaggatcgggcacgcggccagaaaagtctgtttggagatgaacccggcaacgatgaa
cagggctcggcggatgaggccctgctgccggaagccgaagactggtcccgggcacaaaag
ctggctgcggaaaaggaagtcttcggtttttatctgacctcacatccgctggccgaaatg
ggggattccctgaccaaatatgcccagaacaaaaccaacgaacttgcggaaatggaagac
cgggatgaagtgattctggccggcatgatctcatccatcaaaaatgcagccaccaaaaag
ccgagcaaaaacggtcacacccgctatgtgaactttgacttcgaagacccgcatggcctg
gtccgctgcatcatgtggcccgaacagtatgcccgcttcggtgaaaaagtcaaaatggaa
gcgatggtcatcatcaagggaaagatagataaacggggcagggagccgaacgtcatcgtc
gaccagttgctgactctcaatgacgcccgcaagcagtttacggatcggctggcgattaac
ttcaaacggggcgtgcatacgcgacaggacatggtcaacgtgcatgatgtgctgacgcag
ttcccgggccagaccgaggtcatcctggtagtcgattccgtcgatcaggaaaagcctgaa
accagcctgagatacgtcttaaacccccctggcaatctgcgtgtctcctgcagtgaagaa
tttgaaaatcgcttaaaggccactatcggcgaaagccatatccactttcacacccctgtc
gtgaagaaaaaaacgatcaatggaagtatcggtcgctaa
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