Gimesia panareensis: Pan110_41400
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Entry
Pan110_41400 CDS
T07079
Symbol
rpoA_1
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
gpn
Gimesia panareensis
Pathway
gpn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gpn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Pan110_41400 (rpoA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gpn03021
]
Pan110_41400 (rpoA_1)
03400 DNA repair and recombination proteins [BR:
gpn03400
]
Pan110_41400 (rpoA_1)
Enzymes [BR:
gpn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Pan110_41400 (rpoA_1)
Transcription machinery [BR:
gpn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Pan110_41400 (rpoA_1)
DNA repair and recombination proteins [BR:
gpn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Pan110_41400 (rpoA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
TPR_2
TPR_1
TPR_8
TPR_19
TPR_14
TPR_16
TPR_12
ANAPC3
TPR_9
ARM_TT21_N
SAM_EPH
TPR_CcmH_CycH
ARM_TT21_C
TPR-S
ARM_TT21
Motif
Other DBs
NCBI-ProteinID:
QDU51771
LinkDB
All DBs
Position
complement(5457777..5459102)
Genome browser
AA seq
441 aa
AA seq
DB search
MSVDELIDVKGVFNSTESVGYSDVEQLTRIVCSDQVSELNSEVQALVKNIAEGQGTPELC
ARVGIALHLLGKHKEAVTQLEKVQDNATASFFHAVSLIALKRYSEADQQLEAAAKLGYDS
IECSLRRAETLRLVGKLDDAESLLSSIAKDAAGRAEYSFQMGCIRSDRGDLYGAIEYFER
AVDMDPRHSRAIFRLAGENASRGNDEDAIRLYEQSLSSPPFYLGAILNLGLLYEDMENYP
AAAFCFRRILEADPTNEMAAMYLKDIEAADNMYYDEETARNEARMKQLLDRPVTDFELSV
RSRNCLHAMDIHTLGDLTRVSENDLLAGKNFGQTSLDEIREMLSSFGLHIGQNLHEALGQ
DGGYAALPPELADNPVTEKPISDLGLSVRSRKCMSRLGIGTIGELLRRSPDELLASRNFG
VTSLNEIREKLTEMNLKLRND
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgtcgacgaattaattgacgtaaaaggtgtattcaacagcactgagagtgtaggc
tactcggacgtagagcaattgacacgcattgtttgctctgaccaggtttcagagctcaac
agtgaagtacaggcgctcgtcaaaaacattgcagaagggcagggaactcccgagctgtgt
gcccgggttggcattgcactgcacctgcttggaaaacacaaagaagcagtcacccagctg
gaaaaagtgcaggacaacgccactgcttcatttttccatgcggtttctctgatcgccctc
aagcgatactcagaagccgatcagcaacttgaagctgctgccaaactgggttacgactcg
attgaatgctcactgcgacgtgcagaaactctgcgtctggttggcaaactggatgacgca
gaatcgctgctgtcgtccatcgcgaaagatgcagccggccgtgccgagtattcgttccag
atgggttgtatccgctcagatcgcggcgacctctacggtgcgattgaatacttcgagcgg
gccgtcgacatggatccccgccactcacgagccattttccgactggcaggagagaacgca
tcacgtggtaacgacgaagatgccattcgcctgtatgagcagtcgctgtccagcccgccc
ttctacctgggcgcgatcctgaacctgggtctgctgtacgaagatatggaaaactacccg
gctgccgccttctgtttccgtcggattctggaagcggatccaaccaacgaaatggcagcg
atgtacctgaaggacatcgaagcagccgacaacatgtactacgacgaagaaaccgcccgc
aacgaagcccgcatgaagcagctgctggatcgtccggtcaccgacttcgaactgtctgtc
cgcagccgcaactgtctgcacgcgatggacattcacacgctgggcgacctgacacgcgtc
agtgaaaacgacctgctggccggtaagaacttcggacagacctcactggacgaaattcgc
gagatgctgtcttccttcggtctgcacatcggtcagaacctgcacgaagctctgggacag
gatggcggctacgctgctctgcctccggaactggcagacaacccggtcaccgaaaagccg
atctccgatctggggctttccgtgcgttcgcgaaaatgtatgtcgcgtctcggtattggc
accattggtgagctgctgcgtcgcagccccgatgagctgctggccagccggaacttcggt
gtgacctcgctgaacgaaattcgcgagaagctgaccgagatgaacctcaagctgcgtaac
gactag
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