Gordonia polyisoprenivorans: GPOL_c14020
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Entry
GPOL_c14020 CDS
T01719
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gpo
Gordonia polyisoprenivorans
Pathway
gpo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gpo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GPOL_c14020 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpo03400
]
GPOL_c14020 (mfd)
Enzymes [BR:
gpo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GPOL_c14020 (mfd)
DNA repair and recombination proteins [BR:
gpo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GPOL_c14020 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MEDS
AAA_30
AAA_22
DUF3638
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AFA72456
UniProt:
H6MRJ0
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All DBs
Position
1602765..1606340
Genome browser
AA seq
1191 aa
AA seq
DB search
MSSSPALAGLAAVTCSDASLSALREKGDTPRLDITGPDAARPFVVAALAHGTAPLLVVSA
NGREADDLTAELAELLDDPDAVTQFPSWETLPHERLSPSADTVGRRLAVLHRLAEPGKTP
LRVIVTTVRSLVQPMAPGLGEVRTITLRENIEIDFDKLLADLVEMAYERVDMVGRRGEFA
VRGGILDVFPTTADYPVRVEFWGDEITEMRAFSVADQRSQPEVDASVVQIHPCRELVLTD
QVRNRAADLAAEHSADQALSEMLTKLSEGIPVEGMEALIPALVDGRMQLLTEVLPDRSRV
LILDPEKVRTRAADLAATGAEFLEASWNAAALGASAPVDTRGGSAGIDLQASAYRPLDEV
LDTTVEAGRSWWTMSPLSSGFDAEFDLDLTPGPTPHGNDDEIAQTFAMLRAHVATGKPAA
IVVAGKGTATRIAERLSDAEVPHKLADAGAPPVAGEVSVYCGTLRRGVIAPSAGLVIVTE
SDLTGARVAAVRDGRRLPAKRRNQVDPLALTAGDLVVHDQHGIGKFVEMIERTVSGARRE
YLVLEYAAGKRGQPGDRLYVPMDALDQLSRYVGGEQPSLSKLGGSDWQNTKRKARKAVRE
IAGELVQLYAARHAAPGYAFSPDTPWQREMEDAFDFTETVDQMTVIGEVKDDMEKAVPMD
RVIVGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTILAQQHLQTFTERMAGFPVRVRGL
SRFTDAKESKEIIEQMAQGSVDVVIGTHRLLQTGIVWKDLGLVIVDEEQRFGVEHKEHIK
SLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGAYARKQVAAAIR
RELLRDGQIFYVHNRVSTIDKTAKDIADMVPEARVVVAHGQMNEDQLERTVSGFWNREYD
VLVCTTIIETGLDISNANTLIVDRAENLGLSQLHQLRGRVGRSRERGYAYLLYSPEKPLT
ETAYDRLATIAQNNELGAGMAVALKDLELRGAGNVLGAEQSGHVAGVGFDLYVRLVGEAV
EAYRAAADGTPVTTEESTEVRIDLPVDAHIPVEYVDSDRLRLEAYRKLASATDDDEVSAV
LAELLDRYGEPPEETRRLAAIAKLRLRCRERGVAEIGAVGTNVKISPLHLLDSEQVRLKR
LYSAASYRATTSVVTLPIPRTGGVGSARLRDNELIDYLTTFLTQLKPTPTD
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctcttcacctgccctcgccgggctcgccgcggtcacgtgctcggacgcatcgctg
tccgccctgcgcgagaagggcgacaccccccgtctcgacatcaccggacccgacgccgcg
cgccccttcgtggtggccgcgctcgcacacggcaccgcgccgctgctggtggtctcggcc
aacggtcgcgaagccgacgacctgaccgccgaactggccgaactgctcgacgatcccgac
gcggtcacccagttcccgtcgtgggagaccctgccccacgaacgtctgtcgccgagcgcc
gacaccgtcggtcgccgtctcgcggtgctgcatcgactcgccgagccgggaaagacgccg
ctacgggtgatcgtgacgacggtgcgctcgctggtccagccgatggcgccgggtctcggt
gaggtccgcaccatcacgctgcgagagaacatcgagatcgatttcgacaagctgctcgcc
gacctcgtcgagatggcttacgagcgcgtcgacatggtcggtcgtcgcggtgagttcgcg
gtccgtggaggcatcctcgacgtgttcccgacgactgcggactatccggtccgagtggag
ttctggggcgacgagatcaccgaaatgcgggcgttctcggtggccgatcagcgcagccag
cccgaggtcgacgcctcggtggtacagatccacccgtgccgtgaactcgtgctgaccgat
caggtgcgcaaccgggcagccgatctcgcggccgaacattccgcagatcaggcgttgtcg
gagatgctgaccaaactctccgagggcattccggtggaggggatggaggccctcatcccg
gcgctggtcgacggacggatgcagttgctcaccgaggtactgcccgaccggtcacgggtg
ttgatcctcgatccggaaaaggttcggacccgcgccgccgacctcgccgcgaccggtgcg
gagttcctcgaggcgtcctggaacgccgccgcactgggtgcctcggcgccggtcgacacc
cgcggcggttccgccggaatcgacttgcaggccagtgcgtatcggccactcgacgaggtt
ctcgacaccacggtcgaggccgggcggtcctggtggacgatgagtcctctgtcgtcgggt
ttcgacgccgaattcgacctcgacctcaccccggggcccactccgcacggcaacgacgac
gagatcgcgcagacgttcgcgatgctccgcgcgcacgtagcgaccggcaaacccgcggca
atcgtggtggcgggtaagggaaccgcaacccgcatcgccgaacggctgtcggacgccgag
gttccgcacaagctcgccgacgccggtgcgccaccggtcgccggggaggtgagcgtgtac
tgcggcaccctgcggcgcggcgtgatcgcgccgtcggccggactggtgatcgtcaccgag
agcgacctgaccggagcgcgggtcgcggccgtgcgtgacgggcgacggctcccggccaag
cggcgcaaccaggttgatccgctcgcgctgaccgcgggtgatctcgtggtgcacgaccag
catggcatcggcaagttcgtcgagatgatcgaacgcaccgtctcgggtgcgcggcgggag
tacctcgtgctcgaatacgcggcgggcaaacgcgggcaacccggcgaccggctctacgtg
ccgatggatgccctcgaccagctctcccgctacgtcggcggtgagcaaccgtccctgtcg
aaactcggcgggtcggattggcagaacaccaaacgcaaggcgcgcaaggcggttcgcgag
atcgccggtgagctcgtgcaactgtacgccgcccgccacgccgccccgggctacgccttc
agtcccgacacgccgtggcagcgtgagatggaggacgccttcgacttcaccgagaccgtc
gaccagatgacggtgatcggcgaggtcaaggacgacatggaaaaggcggtcccgatggac
cgcgtcatcgtcggtgacgtcggctatggcaagaccgagatcgcggtgcgcgcggcgttc
aaggccgtccaggacggcaagcaggttgccgtgctggtcccgacaaccattctggcgcaa
caacatctgcagaccttcaccgaacggatggccgggttcccggtgcgggtgcgtggcctg
tcgcgcttcaccgacgccaaggagtccaaggagatcatcgagcagatggcacagggttcg
gtcgacgtcgtcatcggcacccatcgcctgctgcagaccgggatcgtctggaaggacctc
ggtctggtgatcgtcgacgaggagcagcgcttcggggtcgagcacaaggaacacatcaaa
tcgctgcgcacccatgtcgacgtgctgacgatgtcggcgacgccgatcccgcgcacgctg
gagatgtcgatggcgggcatccgcgagatgtcgacgatcctcaccccgcccgaggaacgt
cacccggtgctgacctatgtcggcgcctacgcgcgcaagcaggttgccgcggcgattcgc
cgagaactgttgcgtgacgggcagatcttctacgtccacaatcgggtctcgaccatcgac
aagaccgccaaggacatcgccgacatggtgcccgaggcgcgggtggtggtcgcacacgga
cagatgaacgaggatcagctcgagcgcaccgtgtccggattctggaaccgcgaatacgac
gtgctggtgtgtaccaccatcatcgagaccggactcgacatctccaacgcgaacaccctg
atcgtcgaccgcgccgagaatctcggcctgtcgcagctgcatcagttgcgtggacgcgtc
ggccgcagtcgtgaacgcggatacgcctatctgctctacagtcccgagaaaccgctcacc
gagacggcctacgaccgcctggcgaccatcgcgcagaataacgagctcggcgccggaatg
gcggtggcgctcaaagatctcgagctgcgtggggccggaaacgtgctcggcgcagagcaa
tccggtcacgtcgcgggtgtcggtttcgatctgtacgtccgtctggtcggcgaggcggtg
gaggcctaccgggccgcggccgacggcacaccggtcaccaccgaggaatcgacggaggtg
cgcatcgatcttccggtcgatgcccacatcccggtcgaatacgtcgactccgatcgtctg
cgtctcgaggcgtatcgcaaacttgcctcggccaccgacgacgacgaggtctccgcggtg
ctcgcggagttgctcgaccggtacggcgaaccgccggaggaaacccggcgactcgcggcg
atcgccaaactccgtctgcggtgccgagaacggggtgtcgccgagatcggtgcggtcggc
accaacgtcaagatctcgccgctgcatctgctcgacagtgaacaggtccgactcaagcgg
ctgtattcggcggcgtcctaccgcgccaccacatcggtcgtgacgctgccgatcccgcgc
accggtggtgtcgggtccgcgcgtctgcgcgacaacgaactcatcgactacctgacgacg
ttcctgactcagctcaaacccactccgaccgactag
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