KEGG   Gordonia polyisoprenivorans: GPOL_c16890
Entry
GPOL_c16890       CDS       T01719                                 
Name
(GenBank) putative ATP-dependent DNA helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
gpo  Gordonia polyisoprenivorans
Brite
KEGG Orthology (KO) [BR:gpo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gpo03400]
    GPOL_c16890
Enzymes [BR:gpo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     GPOL_c16890
    5.6.2.6  RNA 3'-5' helicase
     GPOL_c16890
DNA repair and recombination proteins [BR:gpo03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    GPOL_c16890
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr WHD_3rd_Lhr WHD_4th_Lhr DEAD WHD_2nd_Lhr Helicase_C AlkZ-like ResIII AAA_22 AAA_25 DUF6406 PhoH
Other DBs
NCBI-ProteinID: AFA72738
UniProt: H6MUE2
LinkDB
Position
complement(1913270..1917946)
AA seq 1558 aa
MAAPSVLDRFTAPTRRWFSGTFAEPTAAQTGAWSSIADGNHTLVIAPTGSGKTLSAFLWA
LDRLAVRPDRARGTRVVYISPLKALAVDVERNLRAPLTGITRAAQELGDPEPAITVGLRS
GDTPAATRRSLVRTPPDILITTPESLYLMLTSSARETLTGVEAVIIDEVHAVAGTKRGTH
LALSLERLDELLETPAQRIGLSATVRPPEVVAGFLAGAAPCTIVRPPASKTFDLRVDVPV
EDMANIPPPPDAPGSEDLDDAFSPTAGSLWPYVESAIVDLIEANRTTIVFANSRRLAERL
TARLNEIAESRTAPAAVTAAANPRVAGGAPAMVMGSGASSAATTLLARAHHGSVSKEQRA
EIEDELKTGRLRCVVATSSLELGIDMGAVDLVVQVEAPPSVASGLQRIGRAGHQVGEISQ
GVLFPKHRTDLIHCTVAVSRMREGEIEELRVPTNPLDVLAQQTIAAASIDELHVDEWFEV
VRRSAPYRELGRGVYEATLDLISGRFPSDEFAELRPRVTWDRERNVLIGRRGAQRLAVTS
GGTIPDRGLFGVFMVGEKQTRVGELDEEMVYESRVGDVFALGATSWRIEDITHDRVLVTP
AFGQPGRLPFWIGDAVGRPAELGAAIGRFTGEIADPAELDRRADELGLTTYARENLGALI
AEQRDATTHLPTDRTLVVERFRDELGDWRLILHSPYGLRVHAPWASAISARLKTTLGLDG
AVTASDDGIIVRLPDTDDNPPGAAVFTIDPDDIEQLVTDALAESSMFASRFRECAARALL
LPRRDPGRRAPLWQQRQRSAQLLAVASQFPDFPIVLEAVRECLQDVYDLPALIDLLRSVA
TRRVRVVETETESPSPFAASLLFGYVGAFMYNDDAPIAERRAAALSLDTALLAQLLGRVD
LRELLDPGVITEVTNRLQRLEPSRQARDAQDVVDLLRWLGPLTTEEVDARYRGDDPDAVP
GGAEPVDAATVLAALHRDGAIISVSQRGRALWAAIEDTARLRDALGVPAPLGVPAAFLEQ
VADPVGDLVHRYARTHGPFTVDEAADSLGLGVAVIRDVLVRMAGERKVIEGDFLPEATGT
QWCHSDVLGQIRRGSLAASRAEIEPVDDATLSRFLAGWQHVTPRTAGRGNHDDRLTGVDG
VSVAIDQLAGLPLPASAWESLILPSRVADYSPAMLDELLSSGEVVWSGAGRIGGADGWIR
LCPADLTEVLLPEPDEIDTTEVHRRLLETFTGSGGLRFAQFVGDFADLDAPATASMTAIT
AEVESGLWDLVWSGRLSNDSFAPVRALLTPRSSGGTRTAPAHRSRARTPRLRSSRLTTRH
LISTTPAVSTPATVAGRWFTLPDRATDPTVSTQVLCDQLLTRYGVVTRGSVVAEGVVGGF
ARIYKALNIFEDNGFVRRGYYVDGLGGAQFAAPATVDELRRHTLDHRDTSTHTAVVLAAT
DPANPYGAALSWPDRPESGHRPGRKPGALVVLVDGVLTIYVERGGKTVLTFEDSESVLRS
AATALAGVVHDGRVSRLAIDQIDGAESLRSDLAAILVDAGFSTTPRGLRLRYGHHARR
NT seq 4677 nt   +upstreamnt  +downstreamnt
atggctgcgccgtcggttctcgatcgcttcaccgcccccacgcggcggtggttcagcggc
accttcgccgagccgaccgccgctcagaccggggcgtggtcctcgatcgccgacggcaac
cacacgctggtcatcgctcccaccggctcgggtaaaaccctctcggcattcctgtgggcc
ctcgaccgcctcgcagtgcgcccggatcgggcacgcggcacccgggtcgtctacatctcg
ccgctcaaggccctcgccgtcgacgtcgaacgcaacctgcgtgcaccgctgaccggcatc
acccgcgcggcgcaggagctcggcgatcccgagccggcaatcaccgtcggcctgcgctcc
ggggacaccccggccgcgacccgccgcagcctggtccgcacaccaccggacatcctcatc
accaccccggagtcgctgtacctgatgctgacgtcgtcggcgcgggagacactgaccggc
gtcgaggccgtgatcatcgacgaggtccacgcggtggcgggcaccaagcgcggcacccat
ctggcgctgtccctcgagcgtctcgatgaattgttggagacacccgcgcagcgcatcgga
ttgtcggcgaccgtccgcccacccgaggtggtcgcgggcttcctggccggtgccgcgccg
tgcacgatcgtgcgtccacccgcgagcaagacgttcgatcttcgcgtcgacgtgccagtg
gaagacatggccaacatcccgccaccaccggacgctcccggttccgaggatctcgacgac
gcgttctccccgaccgcgggatcgctgtggccctacgtcgaatcggcgatcgtcgatctc
atcgaggccaatcggacgaccatcgtgttcgccaactcccgtcgcctcgccgagcgactg
accgcacggctcaacgagatcgccgaatcccgcaccgcgcccgccgcggtgaccgctgcg
gccaacccgcgggtcgccgggggcgctccggccatggtgatgggtagcggagcgtcctcg
gcggccacgaccctactggcccgggcacaccacggatcggtcagcaaggagcagcgcgcc
gaaatcgaggacgaactcaagaccggccggttgcgatgtgtggtggccaccagttccctc
gagctcggaatcgacatgggcgcagtggatctcgtcgtccaggtcgaagcgccgccgtcg
gtggccagtggtctgcaacgcatcggccgggccgggcatcaggtcggcgagatcagtcag
ggcgtgctgttccccaaacaccgcaccgacctcatccattgcaccgtcgcggtatcgcgc
atgcgggagggcgagatcgaggaactgcgggtacccaccaaccccctcgacgtcctggcc
caacagaccatcgccgcagcctccatcgacgagctccacgtcgacgagtggttcgaggtc
gtgcgccgcagtgcaccgtatcgggagctcggccgcggcgtgtacgaggccaccctggat
ctcatctccgggcgattcccgtccgacgaattcgccgaactgcgtccgcgcgtcacctgg
gaccgcgaacgcaacgtgctcatcggacgccgcggcgcccagcgactcgccgtcacctcc
ggtggcaccattccggatcgtgggctgttcggtgtgttcatggtcggcgagaaacaaacg
cgcgtgggcgaactcgacgaggagatggtctacgagtcacgcgtcggcgacgtcttcgcg
ctcggagccaccagctggcggatcgaggacatcacccacgatcgggtgctggtcacaccg
gcgttcgggcaaccggggcgcctgccattctggatcggtgacgccgtcggtaggccggcc
gaactcggggccgccatcggccggttcaccggtgagatcgccgatcccgccgaactcgat
cgccgcgccgacgagctggggctgaccacctacgcccgtgagaacctcggtgcgctcatc
gccgaacagcgcgacgccaccacccatctgcccaccgaccgcacgctcgtcgtcgagcga
ttccgcgacgaactcggcgactggcggttgatcctgcactccccgtacggcttacgtgtc
catgcgccatgggcgtcggccatctccgcgcgcctgaagaccacgctcggcctcgacggt
gccgtcaccgcctccgacgacggcatcattgtgcgactccccgacaccgacgacaacccg
ccgggcgctgcggtcttcaccatcgaccccgacgacatcgagcaactcgtcaccgacgcg
ctcgccgagtcgtcgatgttcgcctcgcggttccgcgaatgcgccgcccgagcattgctg
ttgccgcgccgcgatcccggtcggcgtgcgcccctgtggcaacagcgccagcgcagcgcc
caattattggccgtggcctcgcaattcccggatttcccgatcgtgctcgaagccgtccgg
gagtgcctgcaggatgtctacgacctacccgccctgatcgatctgctgcgcagtgtggcc
acccgccgggtgcgggtcgtcgagaccgagacggagtcaccgtcgccgttcgcggcatcg
ttgctgttcgggtacgtcggtgccttcatgtacaacgatgatgcgccgatcgccgaaagg
cgggccgcggcactgtctctcgacactgcgctgctcgcccaactgctcggccgcgtcgat
ctacgcgaactcctcgaccccggtgtgatcacggaggtgaccaaccgcctgcaacgactc
gagccgtcgaggcaggcccgcgacgcccaggacgtggtcgatctgttgcgctggctcggt
ccgctgaccaccgaggaggtcgacgcccggtaccgcggtgacgatcccgacgccgtaccc
ggcggtgccgaaccggtcgatgcggcaacggttctcgctgctctgcaccgcgacggcgcc
atcatctcggtgagtcagcgggggcgcgcgctctgggccgcgatcgaggacaccgcacgg
ctccgtgacgcgctcggcgtacccgcaccgctcggggtgcccgcagcgttcctcgaacag
gtcgcggacccggtcggcgacctcgtacaccgttacgcccgtacccacggcccgttcacc
gtcgacgaggcggccgactcactcgggctcggcgtcgccgtcatccgcgacgtgctggta
cgcatggccggcgaacgcaaggtcatcgagggcgacttcctgcccgaggcgaccggcacc
caatggtgtcacagcgacgtgctcgggcagatccgtcgcggatcgctcgccgcgagccgc
gccgagatcgagccggtcgacgacgccaccctgtcgcgcttcctcgcggggtggcagcac
gtgacaccccgcacggccggccgtggcaaccacgatgatcggctgacgggggtcgacggg
gtgtcggtggcgatcgatcagcttgccggactaccgcttccggcgtcggcatgggaatcg
ttgatcctgccgtcgcgcgtcgccgactacagccccgccatgctcgacgagctcctcagt
tccggtgaggtggtctggtcgggcgcggggcggatcggcggtgcggacggttggatccgg
ttgtgcccggccgatctcaccgaggtgctgctccccgagcccgacgagatcgacactacc
gaggtgcatcgccgactactggagacattcaccggttccggcggcttgcgcttcgcacag
ttcgtgggcgacttcgccgacctcgacgcacccgccaccgcgtcgatgaccgcgatcacc
gcggaagtggaatcaggactgtgggacctggtgtggtcgggtcgtctgtcaaacgactcg
ttcgcgccggtgcgtgccctgctcacgccgcgctcatccggcgggacccgcacggccccg
gcacaccgatcccgtgcccgtacaccccggctgcgctcgtcgcgactcacgactcgccat
ttgatctcgaccactccggcggtgtcgacccccgccaccgtggcgggtcgctggttcacc
ctgcccgatcgcgccacggacccgacggtgtccacccaggttctctgcgatcaactgctc
acccggtacggcgtggtgacccgcggctcggtcgtcgccgaaggtgtggtcggcggattc
gcacggatctacaaggccctcaacatcttcgaggacaacggattcgtccgccgcgggtac
tacgtcgacggactcggcggagcgcagttcgccgccccggcgaccgtcgacgagttgcgc
cgacacaccctcgatcatcgggacacgtccacgcacaccgcagtcgtcctcgccgccacc
gatccggcgaatccctacggtgccgctctgtcgtggcccgaccgccccgagagcggtcat
cggcccgggcgtaagcctggtgcgctggtggtattggtggacggcgttctcacgatctac
gtcgagcgcggcgggaagaccgtcctgaccttcgaggacagcgagagtgtattgcgttcg
gcagcaacggctctggccggagtcgtgcacgacggccgggtgtcgcggctggcgatcgat
cagatcgacggcgccgaatcgttgcggtccgacctcgctgccatcctcgtcgacgccggc
ttctcgaccacaccacgcggtctacgcctacggtacggacaccatgcccgaaggtga

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