Gordonia polyisoprenivorans: GPOL_c18880
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Entry
GPOL_c18880 CDS
T01719
Name
(GenBank) putative cold-shock DEAD-box protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gpo
Gordonia polyisoprenivorans
Pathway
gpo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GPOL_c18880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpo03019
]
GPOL_c18880
03009 Ribosome biogenesis [BR:
gpo03009
]
GPOL_c18880
Enzymes [BR:
gpo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GPOL_c18880
Messenger RNA biogenesis [BR:
gpo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GPOL_c18880
Ribosome biogenesis [BR:
gpo03009
]
Prokaryotic type
rRNA helicases
GPOL_c18880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
UvrA_inter
HEM4
CMS1
Cas3-like_C_2
LuxC
Surface-like_ins_dom
Motif
Other DBs
NCBI-ProteinID:
AFA72932
UniProt:
H6MX10
LinkDB
All DBs
Position
2140558..2142321
Genome browser
AA seq
587 aa
AA seq
DB search
MTETPAADRPDADAITFDDLDIDDRVRSAIAEVGYETPSPIQAATIPPLMAGRDVVGLAQ
TGTGKTAAFAIPILSRIDPAVRRPQALILAPTRELALQVSEAFSRYSAHMPEVRVLPIYG
GQSYGVQLAGLRRGAQVIVGTPGRVIDHLDKGTLDISELEYLVLDEADEMLTMGFAEDVE
RILAETPDSKQVALFSATMPSAIRRLAQKYLHDPQEITVKSKTATAQNITQRYLQVSHQR
KLDALTRFLEVETFDAMIVFVRTKQATEELAERLRARGFSAVAINGDMVQAQRERTINQL
KDGGIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSP
RERHLLRAIERATRQPLTEIGLPSVEDVNAQRVARFADSITENLTSDHLDMFRKLVEDYA
RDKDVAMADIAAALALETRDGGFLMAPDPPESERPARREREPRKGGGSYATYRIAVGRKH
KVSPGAIVGAIANEGGLTRGDFGNISIRDDFSLVELPDNLDRDTLDRLRDTRIGKHPIDL
RRDQGPPRARGGNKRAGQGQRGRDGHHSRGDSWGKRGSRHVAGRGRS
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagaccccagccgccgaccgccccgacgccgacgcgatcaccttcgacgacctc
gacatcgacgaccgtgtgcgcagtgcgatcgccgaggtcggatacgagacaccctcgccg
atccaggctgcgacgattccgccgttgatggcgggccgcgacgtcgtcggcctggcccag
accggtaccggtaagaccgcggccttcgcgatcccgatcctgtcccgcatcgacccggcg
gttcgtcgtccgcaggcgctgatcctcgcgcccacgagagaactcgccctgcaggtgtcc
gaggccttcagccggtactcggcgcacatgcccgaggtgcgggtgctgcccatctacggt
gggcagagttacggcgtgcagttggccgggttgcggcgcggtgcgcaggtcatcgtcgga
accccgggccgtgtcatcgatcacctcgacaagggcaccctcgacatctccgaactcgaa
tacctcgtcctcgacgaggccgacgagatgttgacgatgggtttcgccgaggacgtcgag
cgcatcctggccgagacgcccgactccaagcaggtggcgctgttctccgcgaccatgccc
agcgcgattcgccgactcgcgcagaagtacctgcacgatccgcaggagatcacggtcaag
tccaagaccgcgaccgcccagaacatcacgcagcgctatctgcaggtgtcgcatcagcgc
aagctcgacgcgttgacccggttcctcgaggtcgaaaccttcgacgcgatgatcgtgttc
gtgcgcaccaagcaggcgaccgaagaactcgccgagcggcttcgggcgcgcggattctcg
gcggtcgccatcaacggcgacatggtgcaggcccagcgagagcggaccatcaaccagctc
aaggacggtgggatcgacatcctcgtcgccaccgacgtcgccgctcgcggactcgacgtc
gaccgcatctcgcatgtggtcaactacgacatcccgcatgacaccgagtcctatgtgcac
cgcatcgggcggaccggccgggccggccggtcgggtaacgcgctgctgttcgtctcgccg
cgggaacgccacctgctccgggccatcgaacgcgccacccgccagccgctgaccgagatc
gggctgccgtcggtggaggacgtcaacgcccagcgtgtggcccgcttcgctgactcgatc
accgagaacctgacctccgatcacctcgacatgttccgcaagctcgtcgaggactacgca
cgcgacaaggacgtcgccatggccgacatcgccgcggcgctggccctcgagacgcgcgac
ggtggcttcctgatggctcccgacccgcccgagagcgagcggccggcccgccgtgaacgg
gaaccgcgcaaggggggcggctcgtatgccacctatcgcatcgcggtgggccgcaaacac
aaggtgtcacccggcgcgatcgtcggtgcgatcgccaacgagggcggcctcacccggggt
gatttcggcaacatcagcatccgcgacgacttctccctcgtcgaattgccggacaacctc
gaccgcgacaccctcgaccggctccgcgacaccagaatcggcaagcacccgatcgatctg
cgtcgcgaccagggcccaccccgcgcccggggcggcaacaaacgcgctggtcaaggtcag
cgcggtcgagacggtcaccactcgcgcggtgacagctggggcaaacgcggctcgcgtcat
gtcgccggtcgcgggcgtagctga
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