Gordonia polyisoprenivorans: GPOL_c19590
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Entry
GPOL_c19590 CDS
T01719
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gpo
Gordonia polyisoprenivorans
Pathway
gpo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GPOL_c19590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpo03019
]
GPOL_c19590
03009 Ribosome biogenesis [BR:
gpo03009
]
GPOL_c19590
Enzymes [BR:
gpo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GPOL_c19590
Messenger RNA biogenesis [BR:
gpo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GPOL_c19590
Ribosome biogenesis [BR:
gpo03009
]
Prokaryotic type
rRNA processing factors
GPOL_c19590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
Motif
Other DBs
NCBI-ProteinID:
AFA72998
UniProt:
H6MXW6
LinkDB
All DBs
Position
2227700..2231215
Genome browser
AA seq
1171 aa
AA seq
DB search
MTDNGSPADANAASDPVEDFPSKLRVHALARVLGLTSRQVLAHLAELGWHTRSPQSSVER
EMAQAVAQRVRETEPPADAATPPAEATQVETPHVEPTVAAVEEPVASVTESDVTESDVAE
TAVAETAVADTEVAEAPAEETPAEDTPTEETPAGEAATSESPADDTAAPDTAAPDTAAPD
TAAPPQSDVPMLFSAADVDSHAPVQATGEVAAGPLFLQPDTSTPAPSRSARTSSPDSTKT
DSTKTESAKTESTNRADTATDTDDQSDDDGSEDDSSGEGGRNRRRRRGRRGRGRGRGDQA
DRTDSPEDSGSQDDDSDSTDLSSREGDSADSSDDSGATGTSSADKQQSGSGKKSGKKSGK
KDGTKADGSKADGSGSDGSGPDRGGADKARGKGDDKNPADDDTAESAEDADTDDESDDAD
DSTVPTSKRRRRRRRRKGGGEAEDVAADDPPNTVVHEREPRSKRVRDEVQGISGSTRLEA
KRQRRRDGRDAGRRRPPILSESEFLARREAVERVMVVRERSANSSLHTTDYADPAAIEDY
TQVAVLEDGVLVEHFVTTETSSSMVGNIYLGRVQNVLPGMEAAFVDIGRGRNGVLYAGEV
NWDAAGLDGGSRKIEQALSPGDNVVVQVSKDPVGHKGARLTTQISLAGRYLVYVPGGSST
GISRKLPDVERKRLKQILAKLVPDDAGVIIRTASEGVSADDLAADIERLESKWKAIESAV
SDAKSDGKKNNGSQNPRALYEEPDLLVRVVRDLFNEDFRKLVIEGDKAWNLVEGYVSSVA
PDLLERVEKFERSHADAPDSFVVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVIDVN
TGKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRRLT
EALARDRTRHQVSEVTSLGLVQMTRKRLGTGLLEAFSTTCAACGGRGVIVHSAPVEVRTD
DAGRADAGSKKSRRGKRKPEQPAEQHKPAHNPAEHPMFRAMAAHAHDGDEDHDGLVHEDH
DGHEAATTSRHRPQNAPERTDTPEPEEADVAASEGTDTAAESATDTDDATDTVSSTDATG
RASTNGEVTVSAEPENVAQPASARRGRRRAARRAASPTTTSEAPAMVVADASVKPLTTFG
PITETAETAVAVRQRPRRRAAGRPAGPPADE
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacaacgggtcaccggctgacgcgaacgcagcgtcggatccggtggaagatttt
cccagcaagcttcgtgtgcacgcactcgcccgagtgctcggcctgaccagtcgccaggtg
ctcgcgcacctcgccgagttgggctggcacacccgtagcccgcaatcgagcgtcgagcgg
gagatggcccaggcggtcgcgcaacgcgtgcgcgagaccgagccgcccgccgacgcggcc
acaccgccggccgaggcaacccaggtcgagaccccgcacgtggagccgaccgtggccgcg
gtggaggagccggtggcctctgtcaccgagtccgatgtcaccgagtccgatgtggccgag
accgctgtggccgagaccgctgtcgccgacaccgaggtggcggaagcccccgccgaagag
acaccggccgaagacacgcctaccgaagagactccggcgggtgaggcagcgacatccgag
tcgccggccgatgacactgcagcgcccgacactgcagcgcccgacactgcagcgcccgac
acagcagcgccgccgcagtcggacgtgccgatgttgttctccgcggccgacgtcgacagt
catgcgcccgtccaggcgaccggtgaggtcgcggcgggccccttgttcctgcagccggac
acctcgactcccgcgccgtcccgatcggcacgcacttcgagcccagactccacgaagacc
gactccacgaagaccgaatcggcgaagaccgaatcgacgaaccgggcggataccgccacc
gataccgatgatcagtccgacgacgacggttccgaggacgattcgtcgggtgaaggcggg
cgtaaccgcaggcgccggcgtggacgtcgcggtcgcggtcgcggtcgcggcgatcaggcc
gatcgtacggactcgccggaggactccggatcgcaggacgacgactccgattccaccgat
ctgtcgtcgcgtgagggcgactccgccgattcgtccgacgactccggtgcgaccggtaca
tcgtcggccgacaagcagcagtcgggatccggcaagaaatcggggaagaagtccggcaag
aaggacggcaccaaggccgacggatcgaaagccgacggctccggaagcgacggatcgggg
cctgaccggggcggagccgacaaggccaggggcaagggtgacgacaagaaccctgccgac
gatgacacggcggagtccgccgaggacgccgataccgacgacgagtcggatgatgccgac
gattccacggtgccgacctccaagcggcgccgtcgccggcgtcgacgcaagggtggcggc
gaggccgaggatgtggcagccgacgatccgccgaacaccgtggtgcacgagcgtgagccg
cgcagcaagcgggtccgcgacgaggtgcagggcatctccgggtcgacgcggctcgaggcc
aagcgtcagcgtcgtcgggacggccgcgacgccggtcgccgtcggccaccgatcctgagt
gagtcggagttcctcgcgcgccgcgaggccgtcgagcgggtcatggtggtgcgtgaacgc
agcgccaacagttcgctgcacaccaccgattacgccgatcccgcggcgatcgaggactac
acgcaggtcgcggtgctcgaggacggcgtcctcgtcgaacatttcgtcaccaccgagacg
tcgtcgtcgatggtcggcaacatctatctcggacgcgtacagaatgtgctccccggcatg
gaggccgcgttcgtcgacatcggacgcggacgcaacggtgtcctctacgccggtgaggtc
aactgggatgccgcgggcctcgacggcgggtcccgcaagatcgagcaggcactgtcaccc
ggtgacaacgtggtcgtgcaggtcagcaaggacccggtgggtcacaagggtgctcgtctg
acgacgcagatctcgctggccgggcgttatctggtgtacgtgccgggcggttcgtcgacc
ggcatcagccgcaagctgcccgacgtcgagcgcaagcgtctcaagcagatcctcgccaaa
ctcgtccccgacgacgccggcgtgatcatccgcaccgcatcggagggggtcagcgccgac
gatctcgccgccgacatcgaacgtctcgagtccaagtggaaggcgatcgagtccgcggtc
tccgacgcgaagtccgacggcaagaagaacaacggctcgcagaatccgcgggcactgtac
gaggaacccgacctactggtgcgggtcgtccgtgacctgttcaacgaggacttccgcaag
ctcgtcatcgagggtgacaaggcgtggaacctcgtggagggctacgtcagttcggtcgct
cccgacctgctcgagcgggtcgagaagttcgagcgctcccacgccgacgcgccggactcc
ttcgtggtgcaccggatcgacgagcaactcgccaaggcgctcgaccgcaaggtctggctg
ccctcgggtggcacgctgatcatcgagcacaccgaggccatgacggtcatcgacgtcaac
accggcaagttcaccggcgcaggcggcaacctcgaggagacggtgacccgtaacaacctc
gaggcggccgaggagatcgtgcggcagatgcggcttcgcgacatcggcggcatgatcatc
gtcgacttcatcgacatggtcctcgaatccaaccgcgatctggtgttgcgccgtctcacc
gaggccctggcgcgtgatcgcacccgtcaccaggtgtccgaggtgacctcgctcggcctg
gtgcagatgactcgcaaacgactgggaaccggtctgctggaagcgttttcgaccacctgc
gccgcctgtggtggccgcggtgtgatcgtgcattccgcgccggtggaggtccggaccgac
gacgcggggcgtgccgacgccgggtcgaagaagtcgcgtcgcggcaagcgcaagcccgag
cagcccgccgagcaacacaaacccgcccacaatccggccgaacacccgatgttccgggcg
atggcggcgcacgcccacgacggcgacgaggatcatgacggtctggtccacgaggatcat
gacggtcacgaggccgcgacgacctctcgacaccgaccgcagaatgctccggagagaacc
gacacaccggaaccggaggaggccgacgtcgcggcttcggagggaaccgacaccgcggcc
gagagtgccaccgacacagacgatgccaccgacaccgtgtcgtcgaccgacgccaccggg
cgcgcatcgaccaacggcgaggtcacggtgagcgctgaacccgagaatgtggcgcaacct
gcgtcggcccgtcggggcaggcgacgcgccgcacgtcgcgccgcatcgccgacgacgacg
tcggaggcgccggcgatggtcgtcgcggacgcctcggtcaagcccctgaccacgttcggc
ccgatcaccgagacggccgagaccgctgtcgcggtccggcagcggccgcggcgtcgggct
gcgggtcgtccggccggtccgcccgccgacgagtag
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