Gordonia polyisoprenivorans: GPOL_c21560
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Entry
GPOL_c21560 CDS
T01719
Name
(GenBank) putative ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
gpo
Gordonia polyisoprenivorans
Brite
KEGG Orthology (KO) [BR:
gpo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gpo03016
]
GPOL_c21560
Enzymes [BR:
gpo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
GPOL_c21560
Transfer RNA biogenesis [BR:
gpo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GPOL_c21560
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
DUF7696
Motif
Other DBs
NCBI-ProteinID:
AFA73195
UniProt:
H6MZU4
LinkDB
All DBs
Position
complement(2448830..2450116)
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AA seq
428 aa
AA seq
DB search
MSDADPIGAAEESASDSPPVTPLLAPREGVPPVLSSAADFADAAQRLAAGSGPVALDTER
ASGYRYSQRAYLIQIRRTGAGSFLLDPIEEPEALRPVIDALAEPEWILHAADQDLPCLRE
LGFHATTLFDTELAGRLLGLTKVNLAAMVEQFLGFGLQKGHGAADWSKRPLPAEWLNYAA
LDVEVLIELRDAMDAALRDAGKSDWAAEEFAYVLRRPPSPPRTDRWRRTANIHTVKTARG
LAAVRELWSAREEIAQRRDVAPGRVLPDSAIITAAAAAPSTTDELTRLPVFGGPRQRRQA
GIWLSALLRARDLPEAELPPRKTPATGPPPISRWDQRNPEAAARASAVRPLVKQIAEEHT
LPPENLLTPDLVRQLCWEGIDPPITEAAVDARLAAGDARDWQRSLTVGPITAALNEATSS
TSPTPDQS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacgcggacccgatcggagccgcggaggagtccgcgtcggactccccgcccgtc
accccgttgttggcaccgcgtgagggggtgccgccggtcctgtcgtcggccgccgacttc
gccgatgcggcacaacgattggcggcgggcagcggtccggtcgcgctcgacaccgagcgg
gcatcgggctaccgctactcgcaacgcgcctacctgatccagatccgccgaaccggcgcg
ggcagcttcttactcgacccgatcgaggaacccgaggcactgcggccggtgatcgacgcc
ctggccgaacccgagtggatactgcatgccgccgaccaggatctaccgtgcctacgcgag
ctgggattccacgccaccacgcttttcgacaccgaactcgccggccggctgctcgggctg
accaaggtcaatctggccgcgatggtcgaacagttcctcggattcgggctgcagaagggc
cacggggccgccgactggtcgaagcgcccactgcccgcggagtggctcaactacgccgca
ctcgacgtcgaggtactcatcgagttacgcgacgcgatggacgccgccctgcgcgacgcg
gggaaaagcgattgggcggccgaggaattcgcgtatgtgctgcgccgtccaccgtcgccg
ccgcgcaccgatcgctggcggcggaccgccaacatccacaccgtcaagaccgcccggggg
ctggcagcggtccgcgaattgtggtcggcacgtgaggagatcgcgcagcgacgcgacgtc
gcgcccggtcgggtgctgccggactcggcgatcatcaccgccgccgctgccgcaccgtcg
accaccgacgagctgacccgccttccggtcttcggcgggccgcggcaacgacggcaggcc
gggatctggctctcggccctactacgcgcacgcgacctgcccgaggccgaactcccgcca
cgcaagactccggcgaccggtcccccgccgatcagccgctgggatcaacgcaacccggag
gccgcggcacgcgcgagcgcggtccggccgctggtcaaacagatcgccgaggagcacaca
ctaccgccggagaatctgctgacacccgacctggtgcgccagttgtgttgggagggaatc
gatcccccgatcaccgaggcggcggtcgacgcccgcctggcggccggcgacgcccgcgac
tggcagcgttcgctgacggtcggcccgatcaccgcagcgctgaacgaggccacgtcgagc
acctcgccgacgccggaccagagctga
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